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Author SHA1 Message Date
Maxim Cournoyer c42ae60a84
gnu: patman: Fix incomplete get-maintainer patch. 
The full set of patches already merged into the U-Boot is included for
simplicity and avoiding mistakes like the previous one, where a conflicting
hunk got dropped, causing the following error when running patman:

    WARNING: Unknown setting get_maintainer_script

* gnu/packages/bootloaders.scm (u-boot) [source]: Replace the
u-boot-patman-fix-help.patch, u-boot-patman-local-conf.patch and
u-boot-patman-get-maintainer.patch with u-boot-patman-guix-integration.patch.
* gnu/local.mk (dist_patch_DATA): Update patch registrations.
* gnu/packages/patches/u-boot-patman-fix-help.patch: Delete file.
* gnu/packages/patches/u-boot-patman-get-maintainer.patch: Likewise.
* gnu/packages/patches/u-boot-patman-local-conf.patch: Likewise.
* gnu/packages/patches/u-boot-patman-guix-integration.patch: New file.

Reported-by: Jelle Licht <jlicht@fsfe.org>
 2023-01-10 11:37:29 -05:00
jgart 65d24b9a24
doc: Fix documentation typo. 
* doc/guix.texi (VNC Services): Fix typo.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-01-10 11:12:11 -05:00
muradm dc403ec7f1
gnu: services: Fix fail2ban configuration serialization. 
This fixes a regression from 543d971ed2 whereby
match-lambda due to configuration field reordering.

* gnu/services/security.scm:
[serialize-fail2ban-ignore-cache-configuration]: Switch to match-record.
[serialize-fail2ban-jail-filter-configuration]: Switch to match-record.
[serialize-fail2ban-jail-action-configuration]: Switch to match-record.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-01-10 10:47:27 -05:00
Efraim Flashner d0942bfd2d
gnu: onedrive: Update to 2.4.23. 
* gnu/packages/sync.scm (onedrive): Update to 2.4.23.
 2023-01-10 13:01:37 +02:00
Alex Devaure 4b50dccc63
gnu: darktable: Update to 4.2.0. 
* gnu/packages/photo.scm (darktable): Update to 4.2.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-10 11:49:14 +01:00
Abhishek Cherath 5ef6d3ea11
gnu: Add guile-scheme-json-rpc. 
* gnu/packages/guile-xyz.scm (guile-scheme-json-rpc): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-10 11:49:14 +01:00
Paul A. Patience 35eaba00e6
gnu: Add gophernicus. 
* gnu/packages/web.scm (gophernicus): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-10 11:49:14 +01:00
Paul A. Patience 0c0dc72ac0
gnu: Add vger. 
* gnu/packages/web.scm (vger): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-10 11:49:14 +01:00
Giacomo Leidi 5f63811032
services: unattended-upgrade: Add 'operating-system-expression' field. 
* gnu/services/admin.scm (<unattended-upgrade-configuration>)
[operating-system-expression]: New field.
(unattended-upgrade-mcron-jobs): Honor it.
* doc/guix.texi (Unattended Upgrades): Document it.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-10 11:49:14 +01:00
Bruno Victal 22e9b01bda
services: git-daemon: Deprecate 'git-daemon-service' procedure. 
* gnu/services/version-control.scm
(git-daemon-service): Define with 'define-deprecated'
* doc/guix.texi (Version Control Services): Replace with
'git-daemon-service-type'

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-10 11:49:13 +01:00
Luis Henrique Gomes Higino 7ebeafff15
gnu: neovim: Update to 0.8.2. 
* gnu/packages/vim.scm (neovim): Update to 0.8.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-10 11:49:13 +01:00
Ludovic Courtès 04bf1d9634
gnu: gromacs: Remove input labels and use gexps. 
* gnu/packages/chemistry.scm (gromacs)[arguments]: Turn into gexps.
[native-inputs]: Remove labels.  Remove (package-source googletest).
 2023-01-10 11:49:13 +01:00
Ludovic Courtès 7934e9c556
gnu: gromacs: Update to 2022.4. 
* gnu/packages/chemistry.scm (gromacs): Update to 2022.4.
* gnu/packages/patches/gromacs-tinyxml2.patch: Adjust accordingly.
 2023-01-10 11:49:13 +01:00
Jonathan Brielmaier 9b9004253b
gnu: keepassxc: Enable wayland support. 
* gnu/packages/password-utils.scm (keepassxc)[inputs]: Add qtwayland-5.
 2023-01-10 10:39:44 +01:00
Artyom V. Poptsov 5f7ce22201
gnu: Add ftxui. 
* gnu/packages/cpp.scm (ftxui): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-01-10 09:14:53 +01:00
Tobias Geerinckx-Rice 27e40a4463
gnu: bind: Update to 9.16.36. 
* gnu/packages/dns.scm (isc-bind): Update to 9.16.36.
 2023-01-08 01:00:02 +01:00
Tobias Geerinckx-Rice 6106044849
gnu: linux-libre: Bump max-silent-time even further. 
Aarch64 CI build still fail with ‘timed out after 3600 seconds of
silence’.

* gnu/packages/linux.scm (make-linux-libre*):
Increase the max-silent-time to 3 hours.

Reported by akirakyle in #guix.
 2023-01-08 01:00:02 +01:00
Tobias Geerinckx-Rice 03829e066d
gnu: emacs-hsluv: Name git checkout. 
* gnu/packages/emacs-xyz.scm (emacs-hsluv)[source]: Specify a FILE-NAME.
 2023-01-08 01:00:01 +01:00
Tobias Geerinckx-Rice 080c651a63
gnu: emacs-hide-lines: Name git checkout. 
* gnu/packages/emacs-xyz.scm (emacs-hide-lines)[source]: Specify a FILE-NAME.
 2023-01-08 01:00:01 +01:00
Tobias Geerinckx-Rice ec89b1ae16
gnu: emacs-syslog-mode: Name git checkout. 
* gnu/packages/emacs-xyz.scm (emacs-syslog-mode)[source]: Specify a FILE-NAME.
 2023-01-08 01:00:01 +01:00
Tobias Geerinckx-Rice e4673b45d3
doc: Fix <openntpd-configuration> openntpd default. 
* doc/guix.texi (Networking Services): <openntpd-configuration>'s
openntpd field takes a package: it does not default to a FILE-APPEND
call.
 2023-01-08 01:00:01 +01:00
Tobias Geerinckx-Rice ce1db7a544
gnu: fbcat: Fix typo in description. 
* gnu/packages/linux.scm (fbcat)[description]: Fix ‘therof’.  Add newline.
 2023-01-08 01:00:00 +01:00
Marius Bakke 79a9bb25bc
gnu: perftest: Update to 4.5-0.20. 
* gnu/packages/linux.scm (perftest): Update to 4.5-0.20.
[source]: Switch to GIT-FETCH.
[arguments]: Remove.
[native-inputs]: Add AUTOCONF, AUTOMAKE, and LIBTOOL.
[inputs]: Add PCIUTILS.
 2023-01-10 00:14:43 +01:00
Marius Bakke 73d5abd003
gnu: lib3mf: Update to 2.2.0. 
* gnu/packages/engineering.scm (lib3mf): Update to 2.2.0.
 2023-01-10 00:14:43 +01:00
Marius Bakke f29a17c84b
gnu: lib3mf: Remove bundled software. 
* gnu/packages/engineering.scm (lib3mf)[source](snippet): Delete bundled
copies of libzip and zlib.  Adjust header inclusions.
 2023-01-10 00:14:43 +01:00
Marius Bakke 5e36d4381f
gnu: lib3mf: Remove input labels. 
* gnu/packages/engineering.scm (lib3mf)[inputs]: Remove labels.
 2023-01-10 00:14:43 +01:00
Marius Bakke 5e101ab56f
gnu: lib3mf: Remove bundled ACT. 
* gnu/packages/engineering.scm (lib3mf)[source](modules, snippet): New fields.
[arguments]: Add phase to provide act binary.
[native-inputs]: Add AUTOMATIC-COMPONENT-TOOLKIT.
 2023-01-10 00:14:43 +01:00
Marius Bakke df33c8de73
gnu: Add automatic-component-toolkit. 
* gnu/packages/code.scm (automatic-component-toolkit): New variable.
 2023-01-10 00:14:42 +01:00
Ricardo Wurmus 8423ca9da8
gnu: r-biocset: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.12.1.
 2023-01-09 23:08:36 +01:00
Ricardo Wurmus 8ee7f8df76
gnu: r-biocviews: Update to 1.66.2. 
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.66.2.
 2023-01-09 23:08:36 +01:00
Ricardo Wurmus d41e85678a
gnu: r-variancepartition: Update to 1.28.1. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.28.1.
[propagated-inputs]: Add r-remacor.
 2023-01-09 23:08:36 +01:00
Ricardo Wurmus 850638df5a
gnu: r-flowworkspace: Update to 4.10.1. 
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.10.1.
[propagated-inputs]: Remove r-aws-s3, r-aws-signature, r-digest, r-lattice,
r-latticeextra, r-rcpp, r-rcpparmadillo, and r-rcppparallel; add
r-cpp11.
 2023-01-09 23:08:36 +01:00
Ricardo Wurmus 3ac0f4e62c
gnu: r-batchelor: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.14.1.
 2023-01-09 23:08:35 +01:00
Ricardo Wurmus aca59da931
gnu: r-msnbase: Update to 2.24.2. 
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.24.2.
 2023-01-09 23:08:35 +01:00
Ricardo Wurmus f5629558b1
gnu: r-genomeinfodb: Update to 1.34.6. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.34.6.
 2023-01-09 23:08:35 +01:00
Ricardo Wurmus b37a9bfba6
gnu: r-bsgenome: Update to 1.66.2. 
* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.66.2.
 2023-01-09 23:08:35 +01:00
Ricardo Wurmus 3072990b03
gnu: r-biocparallel: Update to 1.32.5. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.32.5.
 2023-01-09 23:07:58 +01:00
Ricardo Wurmus 349d110ae0
gnu: Add r-remacor. 
* gnu/packages/cran.scm (r-remacor): New variable.
 2023-01-09 23:06:16 +01:00
Ricardo Wurmus 8e864f2a3b
gnu: Add r-clustergeneration. 
* gnu/packages/cran.scm (r-clustergeneration): New variable.
 2023-01-09 23:06:05 +01:00
Ricardo Wurmus 51e79fe737
gnu: Update copyright header. 
* gnu/packages/cran.scm: Update copyright header.
 2023-01-09 22:34:58 +01:00
Ricardo Wurmus 6e75790fc0
import/cran: Fix Bioconductor updater. 
* guix/import/cran.scm (latest-bioconductor-release): Use LATEST-VERSION
instead of VERSION, which is always #F.
 2023-01-09 22:32:58 +01:00
Ricardo Wurmus 387c486591
gnu: r-fpc: Update to 2.2-10. 
* gnu/packages/statistics.scm (r-fpc): Update to 2.2-10.
 2023-01-09 22:30:51 +01:00
Ricardo Wurmus bd0da7c791
gnu: r-statmod: Update to 1.5.0. 
* gnu/packages/statistics.scm (r-statmod): Update to 1.5.0.
 2023-01-09 22:30:51 +01:00
Ricardo Wurmus 1e3990d313
gnu: r-sendmailr: Update to 1.3-2. 
* gnu/packages/statistics.scm (r-sendmailr): Update to 1.3-2.
 2023-01-09 22:30:51 +01:00
Ricardo Wurmus 8c33135953
gnu: r-bien: Update to 1.2.6. 
* gnu/packages/cran.scm (r-bien): Update to 1.2.6.
[propagated-inputs]: Remove r-rgdal, r-rgeos, and r-sp; add r-terra.
 2023-01-09 22:30:51 +01:00
Ricardo Wurmus 5aacc2bd98
gnu: r-rtweet: Update to 1.1.0. 
* gnu/packages/cran.scm (r-rtweet): Update to 1.1.0.
[propagated-inputs]: Add r-httr2.
 2023-01-09 22:30:51 +01:00
Ricardo Wurmus fa0dc85d40
gnu: r-mlr3learners: Update to 0.5.6. 
* gnu/packages/cran.scm (r-mlr3learners): Update to 0.5.6.
 2023-01-09 22:30:51 +01:00
Ricardo Wurmus 302f55fd9d
gnu: r-qtl: Update to 1.58. 
* gnu/packages/cran.scm (r-qtl): Update to 1.58.
 2023-01-09 22:30:51 +01:00
Ricardo Wurmus 848c318aa0
gnu: r-tidytext: Update to 0.4.1. 
* gnu/packages/cran.scm (r-tidytext): Update to 0.4.1.
 2023-01-09 22:30:51 +01:00
Ricardo Wurmus 63921834e9
gnu: r-forecast: Update to 8.20. 
* gnu/packages/cran.scm (r-forecast): Update to 8.20.
 2023-01-09 22:30:51 +01:00