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Author SHA1 Message Date
Tobias Geerinckx-Rice 85dcea59f6
gnu: isc-dhcp: Update description. 
* gnu/packages/admin.scm (isc-dhcp)[description]: Note EOL status.
 2022-12-11 01:00:03 +01:00
Tobias Geerinckx-Rice 34242fe5c7
gnu: isc-dhcp: Update to 4.4.3-P1 [fixes CVE-2022-2928, CVE-2022-2929]. 
* gnu/packages/admin.scm (isc-dhcp): Update to 4.4.3-P1.
 2022-12-11 01:00:03 +01:00
Tobias Geerinckx-Rice b853dbd0e2
gnu: nmrpflash: Rephrase synopsis. 
* gnu/packages/admin.scm (nmrpflash)[synopsis]: Rework awkward wording.
 2022-12-11 01:00:02 +01:00
Tobias Geerinckx-Rice 54e7efd5cf
gnu: nmrpflash: Update to 0.9.19. 
* gnu/packages/admin.scm (nmrpflash): Update to 0.9.19.
 2022-12-11 01:00:02 +01:00
Tobias Geerinckx-Rice 2202fc9003
gnu: nnn: Update to 4.7. 
* gnu/packages/admin.scm (nnn): Update to 4.7.
 2022-12-11 01:00:02 +01:00
Tobias Geerinckx-Rice bd268c21e5
gnu: inxi-minimal: Reduce reliance on input names. 
* gnu/packages/admin.scm (inxi-minimal)[arguments]:
Use SEARCH-INPUT-FILE.
 2022-12-11 01:00:02 +01:00
Tobias Geerinckx-Rice 932409da9c
gnu: inxi-minimal: Remove input labels. 
* gnu/packages/admin.scm (inxi-minimal)[inputs]:
Remove input labels.
 2022-12-11 01:00:02 +01:00
Tobias Geerinckx-Rice 2dfc21d9ce
gnu: inxi-minimal: Update to 3.3.24-1. 
* gnu/packages/admin.scm (inxi-minimal): Update to 3.3.24-1.
 2022-12-11 01:00:02 +01:00
Tobias Geerinckx-Rice 6c50e416a5
gnu: hyfetch: Update to 1.4.4. 
* gnu/packages/admin.scm (hyfetch): Update to 1.4.4.
 2022-12-11 01:00:02 +01:00
Tobias Geerinckx-Rice 992773d3a2
gnu: dash: Capitalise description sentences. 
* gnu/packages/shells.scm (dash)[description]: Capitalise ‘dash’.
 2022-12-11 01:00:02 +01:00
Tobias Geerinckx-Rice 55e2b9b0a4
gnu: dash: Update to 0.5.12. 
* gnu/packages/shells.scm (dash): Update to 0.5.12.
[arguments]: Don't explicitly return #t from phases.
 2022-12-11 01:00:01 +01:00
Tobias Geerinckx-Rice 885903e2f6
gnu: botan: Update to 2.19.3. 
* gnu/packages/crypto.scm (botan): Update to 2.19.3.
 2022-12-11 01:00:01 +01:00
Tobias Geerinckx-Rice 187880b814
gnu: global: Update to 6.6.9. 
* gnu/packages/code.scm (global): Update to 6.6.9.
 2022-12-11 01:00:01 +01:00
Tobias Geerinckx-Rice 62cb0eae3e
gnu: libhx: Update to 4.8. 
* gnu/packages/c.scm (libhx): Update to 4.8.
 2022-12-11 01:00:01 +01:00
Tobias Geerinckx-Rice 885f18d750
gnu: libdeflate: Update to 1.15. 
* gnu/packages/compression.scm (libdeflate): Update to 1.15.
[build-system]: Use CMake.
[arguments]: Remove #:make-flags and all custom phases.
Add equivalent #:configure-flags and a custom 'check phase.
 2022-12-11 01:00:01 +01:00
Tobias Geerinckx-Rice 2ed751715f
gnu: python-aiounittest: Update to 1.4.2. 
* gnu/packages/check.scm (python-aiounittest): Update to 1.4.2.
 2022-12-11 01:00:01 +01:00
Tobias Geerinckx-Rice 816c7f4e84
gnu: doctest: Update to 2.4.9. 
* gnu/packages/check.scm (doctest): Update to 2.4.9.
 2022-12-11 01:00:01 +01:00
Tobias Geerinckx-Rice 039bef4ac8
gnu: ccache: Update to 4.7.4. 
* gnu/packages/ccache.scm (ccache): Update to 4.7.4.
 2022-12-11 01:00:00 +01:00
Tobias Geerinckx-Rice aceb4e49d1
gnu: byacc: Update to 20221106. 
* gnu/packages/c.scm (byacc): Update to 20221106.
 2022-12-11 01:00:00 +01:00
Tobias Geerinckx-Rice 2b7b0cac71
gnu: fio: Update to 3.33. 
* gnu/packages/benchmark.scm (fio): Update to 3.33.
 2022-12-11 01:00:00 +01:00
Tobias Geerinckx-Rice 930b94809d
gnu: libltc: Update to 1.3.2. 
* gnu/packages/audio.scm (libltc): Update to 1.3.2.
 2022-12-11 01:00:00 +01:00
Tobias Geerinckx-Rice b0913931e9
gnu: realmd: Update to 0.17.1. 
* gnu/packages/admin.scm (realmd): Update to 0.17.1.
 2022-12-11 01:00:00 +01:00
Jelle Licht 688028931f
gnu: emacs-pdf-tools: Update home page. 
* gnu/packages/emacs-xyz.scm (emacs-pdf-tools)[home-page]: Update.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-12-13 21:31:28 +01:00
Konrad Hinsen a67461f0e1
gnu: emacs-hyperbole: Add missing files. 
* gnu/packages/emacs-xyz.scm (emacs-hyperbole)[arguments]: Add a new
INSTALL-DOC phase.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-12-13 21:24:09 +01:00
Nicolas Goaziou 7d570036f0
gnu: emacs-pg: Update to 0.20. 
* gnu/packages/emacs-xyz.scm (emacs-pg): Update to 0.20.
 2022-12-13 21:24:09 +01:00
Nicolas Goaziou c922d935c3
gnu: emacs-fountain-mode: Update to 3.6.1. 
* gnu/packages/emacs-xyz.scm (emacs-fountain-mode): Update to 3.6.1.
 2022-12-13 21:24:08 +01:00
Nicolas Goaziou 98f7332aa8
gnu: emacs-debbugs: Update to 0.35. 
* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.35.
 2022-12-13 21:24:08 +01:00
Nicolas Goaziou 89795dec98
gnu: emacs-project: Update to 0.9.3. 
* gnu/packages/emacs-xyz.scm (emacs-project): Update to 0.9.3.
 2022-12-13 21:24:08 +01:00
dan e4ab2ccb18
gnu: emacs-beancount: Update to 0.0.0-1.687775d. 
* gnu/packages/finance.scm (emacs-beancount): Update to 0.0.0-1.687775d.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-12-13 21:24:02 +01:00
Mark H Weaver d83eef22b2
gnu: icecat: Update to 102.6.0-guix0-preview1 [security fixes]. 
Includes fixes for CVE-2022-46872, CVE-2022-46874, CVE-2022-46875,
CVE-2022-46878, CVE-2022-46880, CVE-2022-46881, and CVE-2022-46882.

* gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update.
(icecat-source): Update gnuzilla commit, base version, and hashes.
 2022-12-13 12:36:39 -05:00
Ricardo Wurmus 3d2b2f12e5
gnu: bedops: Update to 2.4.41. 
* gnu/packages/bioinformatics.scm (bedops): Update to 2.4.41.
[arguments]: Remove trailing #T from build phases; do not set BINDIR in
make-flags; set CC; replace 'install phase.
[native-inputs]: Add diffutils, perl, and which.
 2022-12-13 18:22:55 +01:00
Petr Hodina 22acc0b029
services: nix: Add more configuration fields. 
* gnu/services/nix.scm (<nix-configuration>)[build-directory]: New field.
(nix-service-etc, nix-shepherd-service): Take them into account.
* doc/guix.texi (Nix): Update it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-12-13 17:46:39 +01:00
Lars-Dominik Braun bbcd06e56c
ui: Take package upstream name into account when searching. 
* guix/ui.scm (%package-metrics): Add PACKAGE-UPSTREAM-NAME*.
* tests/ui.scm ("package-relevance and upstream name"): New test.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2022-12-13 17:46:39 +01:00
Lars-Dominik Braun 052faadde7
packages: Add 'package-upstream-name*'. 
* guix/packages.scm (package-upstream-name*): New procedure.
* tests/packages.scm ("package-upstream-name*"): New test.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-12-13 17:46:39 +01:00
Ludovic Courtès a2f0297af0
gnu: guile-gnutls: Add properties for the 'generic-git' updater. 
* gnu/packages/tls.scm (guile-gnutls)[properties]: New field.
 2022-12-13 17:46:39 +01:00
Ricardo Wurmus 23322c2de8
gnu: tophat: Remove trailing #T from build phases and snippet. 
* gnu/packages/bioinformatics.scm (tophat)[source]: Remove trailing #T from
snippet.
[arguments]: Remove trailing #T from build phases.
 2022-12-13 16:31:55 +01:00
Ricardo Wurmus b339e181e1
gnu: python-bx-python: Update to 0.9.0. 
* gnu/packages/bioinformatics.scm (python-bx-python): Update to 0.9.0.
[build-system]: Use pyproject-build-system.
[arguments]: Add phase 'build-extensions and 'disable-cython-doctests.
[native-inputs]: Replace python-nose with python-pytest.
 2022-12-13 16:31:55 +01:00
Ricardo Wurmus de30c74b63
gnu: bioawk: Use gexp. 
* gnu/packages/bioinformatics.scm (bioawk)[arguments]: Use gexp and simplify
'install phase.
 2022-12-13 16:31:55 +01:00
Ricardo Wurmus 057579495f
gnu: blasr-libcpp: Remove trailing #T from build phases. 
* gnu/packages/bioinformatics.scm (blasr-libcpp)[arguments]: Remove
trailing #T from build phases.
 2022-12-13 16:31:55 +01:00
Ricardo Wurmus eaf5198a5e
gnu: pbbam: Drop input labels. 
* gnu/packages/bioinformatics.scm (pbbam)[native-inputs]: Drop labels.
 2022-12-13 16:31:55 +01:00
Ricardo Wurmus 8b2fdcb2c3
gnu: pbbam: Update to 2.1.0. 
* gnu/packages/bioinformatics.scm (pbbam): Update to 2.1.0.
 2022-12-13 16:31:55 +01:00
Ricardo Wurmus 684d046e6c
gnu: pbcopper: Update to 2.0.0. 
* gnu/packages/bioinformatics.scm (pbcopper): Update to 2.0.0.
 2022-12-13 16:31:55 +01:00
Ricardo Wurmus 53f65f7315
gnu: bedtools: Remove unnecessary quasiquotation. 
* gnu/packages/bioinformatics.scm (bedtools)[arguments]: Remove quasiquote.
[native-inputs]: Drop input label.
 2022-12-13 16:31:54 +01:00
Ricardo Wurmus 4f1a36bd7b
gnu: bamutils: Update to 1.0.15. 
* gnu/packages/bioinformatics.scm (bamutils): Update to 1.0.15.
[arguments]: Remove quasiquoting; remove USER_WARNINGS from make-flags.
[native-inputs]: Update libstatgen.
 2022-12-13 16:31:54 +01:00
Ricardo Wurmus 8cc22866c2
gnu: bamtools: Update to 2.5.2. 
* gnu/packages/bioinformatics.scm (bamtools): Update to 2.5.2.
[arguments]: Enable tests; remove extra phases.
[inputs]: Add jsoncpp.
[native-inputs]: Add pkg-config.
 2022-12-13 16:31:54 +01:00
Ricardo Wurmus 6d2afaf25b
gnu: aragorn: Update to 1.2.41. 
* gnu/packages/bioinformatics.scm (aragorn): Update to 1.2.41.
[source]: Fetch C source file from new location.
[arguments]: Drop trailing #T in build phases; use gexp.
[native-inputs]: Add origin for man page.
[home-page]: Update to new home page.
[license]: Update to GPLv3+.
 2022-12-13 16:31:54 +01:00
Maxim Cournoyer 93b0c1e35e
gnu: Add rpi-imager. 
* gnu/packages/raspberry-pi.scm (rpi-imager): New variable.
 2022-12-13 10:11:20 -05:00
jgart 87638cdd48
gnu: mercury: Update to 22.01.4. 
* gnu/packages/mercury.scm (mercury-minimal): Update to 22.01.4.
[arguments]: Remove obsolete and non-existent file from being patched.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-12-13 13:42:12 +00:00
jgart 1810d67ad4
gnu: mercury-minimal: Update to 22.01.4. 
* gnu/packages/mercury.scm (mercury-minimal): Update to 22.01.4.
[arguments]: Remove obsolete file path, update libatomic-ops, and update
libgc-8.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-12-13 13:42:12 +00:00
Sharlatan Hellseher 0682e7c2e3
gnu: python-h5netcdf: Update to 1.1.0. 
* gnu/packages/python-xyz.scm (python-h5netcdf): Update to 1.1.0.
[build-system]: Use pyproject-build-system, to simplify package.
[description]: Style content and add links to referenced projects.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-12-13 13:42:11 +00:00