Commit graph

66109 commits

Author SHA1 Message Date
Efraim Flashner
a02b2f8b86
gnu: libphutil: Deprecate package.
This package was deprecated upstream and the functionality was moved
into arcanist and phabricator.

* gnu/packages/phabricator.scm (libphutil): Deprecate package.
2020-09-06 00:36:58 +03:00
Efraim Flashner
c4c625b386
gnu: arcanist: Update to 0.0.0-2.ceb082e.
* gnu/packages/phabricator.scm (arcanist): Update to 0.0.0-2.ceb082e.
[inputs]: Remove libphutil.
[arguments]: Adjust custom 'install phase for removed input. Wrap binary
with php.
[license]: Add license of vendored library.
2020-09-06 00:36:49 +03:00
Andreas Enge
44f93ed6ed
gnu: seqmagick: Update to 0.8.0.
* gnu/packages/bioinformatics.scm (seqmagick): Update to 0.8.0.
2020-09-05 22:32:33 +02:00
Kei Kebreau
01d5eec92d
gnu: deluge: Update to 2.0.3.
* gnu/packages/bittorrent.scm (deluge): Update to 2.0.3.
[source]: Update URL.
[inputs]: Remove libtorrent, python2-chardet, python2-pygtk,
python2-pyopenssl, python2-pyxdg, python2-service-identity, python2-twisted.
[propagated-inputs]: Add gtk+, librsvg, libtorrent, python-pycairo,
python-chardet, python-dbus, python-mako, python-pygobject, python-pillow,
python-pyopenssl, python-pyxdg, python-rencode, python-service-identity,
python-setproctitle, python-six, python-twisted, and python-zope-interface.
[native-inputs]: Add python-wheel.
[arguments]: Disable tests.  Add 'fix-gettext-warning and 'wrap phase.
2020-09-05 15:57:45 -04:00
Jesse Gibbons
89b091a65f
gnu: Add npiet.
* gnu/packages/piet.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-09-05 22:50:56 +03:00
Efraim Flashner
da09b47b94
scripts: system: Expand some help messages.
* guix/scripts/system.scm (show-help): Add to '--share=SPEC' and
'--expose=SPEC' that it also works for containers.
2020-09-05 22:24:39 +03:00
Oleg Pykhalov
b8477cab7b
gnu: dunst: Update to 1.5.0.
* gnu/packages/dunst.scm (dunst): Update to 1.5.0.
2020-09-05 18:34:36 +03:00
Guillaume Le Vaillant
81ea278e05
gnu: sbcl-ironclad: Update to 0.51.
* gnu/packages/lisp-xyz.scm (sbcl-ironclad): Update to 0.51.
2020-09-05 14:41:42 +02:00
Pierre Neidhardt
5c667b19be
gnu: sbcl-cl-webkit: Update to 20200905.
* gnu/packages/lisp-xyz.scm (sbcl-cl-webkit): Update to 20200905.
2020-09-05 12:51:52 +02:00
Andreas Enge
b8cb3eb63b
gnu: python-docker-py: Rename to python-docker.
This is a follow-up to commit 3146b6da6d.

* gnu/packages/docker.scm (python-docker-py): Rename to...
(python-docker): ...this.
(docker-compose): Adjust inputs.
* gnu/packages/android.scm (fdroidserver): Adjust inputs.
2020-09-05 12:29:36 +02:00
raingloom
6c36daaac7
gnu: Update gPodder to 3.10.16 and disable updater.
* gnu/packages/gpodder.scm (gpodder): Update to 3.10.16 and add patch.
* gnu/packages/patches/gpodder-disable-updater.patch: New file
* gnu/local.mk (dist_patch_DATA): Add patch

Signed-off-by: Andreas Enge <andreas@enge.fr>
2020-09-05 11:58:21 +02:00
Guillaume Le Vaillant
4daa12182d
gnu: Add sbcl-clim-examples.
* gnu/packages/lisp-xyz.scm (sbcl-clim-examples): New variable.
2020-09-05 11:28:09 +02:00
Guillaume Le Vaillant
300b683ff9
gnu: Add sbcl-mcclim-raster-image.
* gnu/packages/lisp-xyz.scm (sbcl-mcclim-raster-image): New variable.
2020-09-05 11:13:53 +02:00
Guillaume Le Vaillant
6b00c18465
gnu: Add sbcl-mcclim-test-util.
* gnu/packages/lisp-xyz.scm (sbcl-mcclim-test-util): New variable.
2020-09-05 11:10:32 +02:00
Maxim Cournoyer
957f4e4c22
gnu: linux-libre: Validate that the cleaned up tarball is free of blobs.
* gnu/packages/linux.scm (make-linux-libre-source): Call the deblob-check
script on the generated tarball archive with the --use-awk and --list-blobs
options.
2020-09-04 21:45:44 -04:00
Maxim Cournoyer
8b41fdaf3f
gnu: make-linux-libre-source: Set output port buffering to line mode.
* gnu/packages/linux.scm (make-linux-libre-source): Set output port buffering
to line mode via setvbuf.  Remove the ad-hoc calls to force-output.
2020-09-04 21:45:44 -04:00
Paul Garlick
49bf16b6b1
gnu: texlive-logreq: Correct synopsis.
* gnu/packages/tex.scm (texlive-logreq)[synopsis]: Correct.
2020-09-04 22:30:11 +01:00
Ricardo Wurmus
468069260c
gnu: r-mnormt: Update to 2.0.2.
* gnu/packages/statistics.scm (r-mnormt): Update to 2.0.2.
2020-09-04 22:01:41 +02:00
Ricardo Wurmus
5e7480350f
gnu: r-rfast: Update to 2.0.0.
* gnu/packages/cran.scm (r-rfast): Update to 2.0.0.
2020-09-04 22:01:41 +02:00
Ricardo Wurmus
7f1358db61
gnu: r-systemfonts: Update to 0.3.0.
* gnu/packages/cran.scm (r-systemfonts): Update to 0.3.0.
[propagated-inputs]: Add r-cpp11.
2020-09-04 22:01:41 +02:00
Ricardo Wurmus
274aa8252c
gnu: r-xgboost: Update to 1.2.0.1.
* gnu/packages/cran.scm (r-xgboost): Update to 1.2.0.1.
2020-09-04 22:01:41 +02:00
Ricardo Wurmus
9a1c809d61
gnu: r-ingredients: Update to 2.0.
* gnu/packages/cran.scm (r-ingredients): Update to 2.0.
2020-09-04 22:01:41 +02:00
Ricardo Wurmus
1926764b9c
gnu: r-xmlparsedata: Update to 1.0.4.
* gnu/packages/cran.scm (r-xmlparsedata): Update to 1.0.4.
2020-09-04 22:01:41 +02:00
Ricardo Wurmus
667e8c85e4
gnu: r-rnifti: Update to 1.2.1.
* gnu/packages/cran.scm (r-rnifti): Update to 1.2.1.
2020-09-04 22:01:41 +02:00
Ricardo Wurmus
350bef92de
gnu: r-trend: Update to 1.1.3.
* gnu/packages/cran.scm (r-trend): Update to 1.1.3.
2020-09-04 22:01:41 +02:00
Ricardo Wurmus
510443a096
gnu: r-ttr: Update to 0.24.2.
* gnu/packages/cran.scm (r-ttr): Update to 0.24.2.
2020-09-04 22:01:40 +02:00
Ricardo Wurmus
40f378e18a
gnu: r-cicero: Update to 1.6.2.
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.6.2.
2020-09-04 22:01:40 +02:00
Ricardo Wurmus
6bc6a71119
gnu: r-mixomics: Update to 6.12.2.
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.12.2.
2020-09-04 22:01:40 +02:00
Ricardo Wurmus
60cc838403
gnu: r-atacseqqc: Update to 1.12.4.
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.12.4.
2020-09-04 22:01:40 +02:00
Ricardo Wurmus
e1636671ec
gnu: r-gkmsvm: Update to 0.81.0.
* gnu/packages/bioconductor.scm (r-gkmsvm): Update to 0.81.0.
2020-09-04 22:01:40 +02:00
Ricardo Wurmus
0d2369be8b
gnu: r-chippeakanno: Update to 3.22.3.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.22.3.
2020-09-04 22:01:40 +02:00
Tobias Geerinckx-Rice
84479dccd1
gnu: gmic: Update to 2.9.2.
* gnu/packages/image-processing.scm (gmic): Update to 2.9.2.
2020-09-04 20:56:07 +02:00
Tobias Geerinckx-Rice
b1e5eb31cd
gnu: cifs-utils: Update to 6.11 [fixes CVE-2020-14342].
* gnu/packages/samba.scm (cifs-utils): Update to 6.11.
2020-09-04 20:56:07 +02:00
Tobias Geerinckx-Rice
c7aee804ea
gnu: python-paramiko: Update to 2.7.2.
* gnu/packages/python-crypto.scm (python-paramiko): Update to 2.7.2.
2020-09-04 20:56:06 +02:00
Paul Garlick
b01c04eb0c
gnu: Add texlive-logreq.
* gnu/packages/tex.scm (texlive-logreq): New variable.
2020-09-04 18:43:18 +01:00
Eric Bavier
46daff38bc
gnu: fpc: Fix reproducibility problem.
* gnu/packages/pascal.scm (fpc)[arguments]: Add 'patch-release-date' to
replace a build timestamp with the release date instead.
2020-09-04 09:33:13 -05:00
Ludovic Courtès
e9db10ae7f
gnu: guix-jupyter: Fix compilation with Guile-JSON >= 4.3.x.
Reported by wehlutyk on #guix.

* gnu/packages/package-management.scm (guix-jupyter)[source]: Avoid
'define-json-mapping' name clash with Guile-JSON.
2020-09-04 15:58:42 +02:00
Lars-Dominik Braun
d6983b1331
gnu: r-httpuv: Unvendor libuv.
* gnu/packages/cran.scm (r-httpuv) [source]: Remove bundled libuv, add
patch.
[arguments] Rewrite header locations, fix pipe server issue.
[inputs] Add libuv.
* gnu/packages/patches/r-httpuv-1.5.4-unvendor-libuv.patch: New file.
* gnu/local.mk: Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-04 15:58:42 +02:00
Pierre Langlois
89e1e44813
gnu: taglib: Update to 1.12-beta-1 [security fixes].
This switches to a yet unreleased version of taglib, to make sure long
standings issues and CVEs are covered until a proper release is made
upstream.

Among these, we have:

- CVE-2017-12678
- CVE-2018-11439
- https://github.com/taglib/taglib/issues/864

* gnu/packges/mp3.scm (taglib): Update to 1.12-beta-1.
[source]: Switch to using git-fetch.
2020-09-04 12:04:43 +01:00
Pierre Langlois
235093fec0
gnu: node: Update 10.22.0.
* gnu/packages/node.scm (node): Update to 10.22.0.
[inputs]: Replace nghttp2 with nghttp2-1.41.
2020-09-04 12:04:43 +01:00
Pierre Langlois
852ae64e11
gnu: Remove emacs-seq package.
It is included with emacs and installing it alongside emacs 27 causes issues.

Fixes <https://bugs.gnu.org/43138>.

* gnu/packages/emacs-xyz.scm (emacs-bugs-hunter)[propagated-inputs]: Remove.
(emacs-erc-status-sidebar)[propagated-inputs]: Remove.
(emacs-psc-ide)[propagated-inputs]: Remove emacs-seq.
(emacs-biblio)[propagated-inputs]: Remove emacs-seq.
(emacs-seq): Delete variable.
(emacs-flycheck-haskell)[propagated-inputs]: Remove emacs-seq.
2020-09-04 12:04:42 +01:00
Arun Isaac
743be81341
gnu: emacs-auctex: Configure executable paths.
* gnu/packages/emacs-xyz.scm (emacs-auctex): Configure absolute paths to
ghostscript and texlive executables.
[inputs]: Add ghostscript.
2020-09-04 15:55:52 +05:30
Morgan Smith
36a7af8161
gnu: Add emacs-org-edna.
* gnu/packages/emacs-xyz.scm (emacs-org-edna): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-09-04 11:46:12 +02:00
Guillaume Le Vaillant
a43f825d4e
gnu: txr: Update to 243.
* gnu/packages/lisp.scm (txr): Update to 243.
2020-09-04 11:38:16 +02:00
Prafulla Giri
3f663e57ab
gnu: kdenlive: Add ffmpeg to input list
* gnu/packages/kde.scm (kdenlive): Add ffmpeg to inputs and wrap
the final binary accordingly to have ffmpeg in it's PATH.
[inputs]: Add ffmpeg.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-04 11:29:51 +02:00
Ludovic Courtès
d60f63a838
.guix-authorizations: Add planglois to the committers.
* .guix-authorizations: Add planglois.
2020-09-04 11:29:51 +02:00
Vinicius Monego
9db1b3786f
gnu: darktable: Add dependency on libavif, ocl-icd.
* gnu/packages/photo.scm (darktable)[inputs]: Add libavif, ocl-icd.
[arguments]: Set LD_LIBRARY_PATH for OpenCL.
[supported-systems]: Remove i686 which is not supported anymore.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-04 11:29:51 +02:00
Vinicius Monego
c49025480e
gnu: darktable: Update to 3.2.1.
* gnu/packages/photo.scm (darktable): Update to 3.2.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-04 11:29:51 +02:00
Ludovic Courtès
2fc8337a14
doc: Document 'file-system-label' and 'uuid'.
* doc/guix.texi (File Systems): Document 'file-system-label' and 'uuid'.
2020-09-04 11:29:51 +02:00
Ludovic Courtès
fe409700d8
doc: Syntax highlighting now handles @var within @lisp.
* doc/build.scm (syntax-highlighted-html)[build](concatenate-pieces):
Handle @var{name}.
2020-09-04 11:29:51 +02:00