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Author SHA1 Message Date
Ricardo Wurmus 11956155e5
gnu: r-bionero: Update to 1.6.1. 
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.6.1.
 2023-03-31 15:25:24 +02:00
Ricardo Wurmus 04b87844df
gnu: r-flowclust: Update to 3.36.1. 
* gnu/packages/bioconductor.scm (r-flowclust): Update to 3.36.1.
 2023-03-31 15:25:24 +02:00
Ricardo Wurmus 44599e7966
gnu: r-rhdf5filters: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.10.1.
 2023-03-31 15:25:24 +02:00
Ricardo Wurmus 4afcef7847
gnu: r-biomart: Update to 2.54.1. 
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.54.1.
 2023-03-31 15:25:24 +02:00
Ricardo Wurmus 91c41b8ce7
gnu: r-annotationforge: Update to 1.40.2. 
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.40.2.
 2023-03-31 15:25:24 +02:00
Ricardo Wurmus 473bd926cf
gnu: r-anvil: Update to 1.10.2. 
* gnu/packages/bioconductor.scm (r-anvil): Update to 1.10.2.
 2023-03-31 15:25:24 +02:00
Ricardo Wurmus 2c3383e8d8
gnu: r-amaretto: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-amaretto): Update to 1.14.0.
 2023-03-31 15:25:24 +02:00
Danny Milosavljevic 56de91b712
gnu: Add fbautostart. 
* gnu/packages/wm.scm (fbautostart): New variable.
 2023-03-31 14:45:27 +02:00
c4droid 1c6238794b
gnu: Add emu8051. 
* gnu/packages/emulators.scm (emu8051): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-03-31 19:31:47 +08:00
ivan-p-sokolov@ya.ru a368e3cf6b
gnu: Add tree-sitter-heex. 
gnu/packages/tree-sitter.scm (tree-sitter-heex): New variable.

Signed-off-by: Andrew Tropin <andrew@trop.in>
 2023-03-31 08:10:29 +04:00
Leo Famulari e914ae1571
gnu: linux-libre 5.15: Update to 5.15.105. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.105.
(linux-libre-5.15-pristine-source): Update hash.
 2023-03-30 23:09:25 -04:00
Leo Famulari 3967426686
gnu: linux-libre 6.1: Update to 6.1.22. 
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.22.
(linux-libre-6.1-pristine-source): Update hash.
 2023-03-30 23:09:25 -04:00
Leo Famulari efcaa0d710
gnu: linux-libre: Update to 6.2.9. 
* gnu/packages/linux.scm (linux-libre-6.2-version): Update to 6.2.9.
(linux-libre-6.2-pristine-source): Update hash.
 2023-03-30 23:09:25 -04:00
Jonathan Brielmaier cb0ae06d76
gnu: icedove: Update to 102.9.1 [fixes CVE-2023-28427]. 
* gnu/packages/gnuzilla.scm (%icedove-version): Update to 102.9.1.
(%icedove-build-id, thunderbird-comm-l10n): Update accordingly.
 2023-03-31 00:45:47 +02:00
Timo Wilken e7558d1647
gnu: Add zsh-completions 
* gnu/packages/shellutils.scm (zsh-completions): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-30 23:18:17 +02:00
Timo Wilken 8c76eb6168
gnu: Add zsh-history-substring-search 
* gnu/packages/shellutils.scm (zsh-history-substring-search): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-30 23:18:17 +02:00
Bruno Victal 6d0ad93020
services: pam-limits-service-type: Deprecate file-like object support in favour for lists as service value. 
* doc/guix.texi (Base Services): Document it.
* gnu/local.mk: Register test.
* gnu/services/base.scm (pam-limits-service-type): Accept both lists and
file-like objects. Deprecate file-like object support.
* gnu/tests/pam.scm: New file.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-30 23:18:16 +02:00
Bruno Victal ed50531885
services: base: Deprecate 'pam-limits-service' procedure. 
* doc/guix.texi (Base Services): Replace pam-limits-service with pam-limits-service-type.
* gnu/packages/benchmark.scm (python-locust)[description]: Update index anchor to manual.
* gnu/services/base.scm (pam-limits-service-type): Set default value.
(pam-limits-service): Deprecate procedure.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-30 23:18:16 +02:00
Bruno Victal 59878230f4
system: Remove obsolete GUIX_LOCPATH workaround. 
* gnu/system.scm (operating-system-environment-variables): Do not set GUIX_LOCPATH.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-30 23:18:16 +02:00
Nicolas Graves 1984d56b0e
gnu: Add scilab. 
* gnu/packages/maths.scm (scilab): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-30 23:18:16 +02:00
Nicolas Graves 13b2d110ee
gnu: Add suitesparse-3. 
* gnu/packages/maths.scm (suitesparse-3): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-30 23:18:16 +02:00
Nicolas Graves f4d7b901db
gnu: matio: Add header file. 
* gnu/packages/maths.scm (matio):
  [arguments] (phases): Add phase install-matioConfig.h.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-30 23:18:16 +02:00
Ricardo Wurmus 42b938ae8c
gnu: Add audmes. 
* gnu/packages/engineering.scm (audmes): New variable.
 2023-03-30 22:40:09 +02:00
Maxim Cournoyer be5e280e5f
Revert "gnu: network-manager: Update to 1.43.4." 
This reverts commit 01984774a2.  It is
apparently a development snapshot, and while working great for the most part, it
caused issues with WPA2 Enterprise WiFi configuration in
nm-connection-editor (see: https://issues.guix.gnu.org/62496).

Reported-by: John Kehayias <john.kehayias@protonmail.com>
 2023-03-30 15:57:14 -04:00
Maxim Cournoyer 7ceedc7df7
gnu: conan: Update to 2.0.2. 
* gnu/packages/package-management.scm (conan): Update to 2.0.2.
[arguments]: Delete relax-requirements phase.  Update patch-paths phase.
Add new patch-hard-coded-GCC-references, use-current-cmake-for-tests and
configure-tests phases.  Update check phase.
[native-inputs]: Replace autoconf with autoconf-wrapper.  Add libtool.
 2023-03-30 15:57:14 -04:00
Maxim Cournoyer 57c3662ddd
gnu: conan: Use gexps and remove input labels. 
* gnu/packages/package-management.scm (conan) [arguments]: Use gexps.  Use
search-input-file in patch-paths phase.
[native-inputs]: Remove labels.
 2023-03-30 15:57:14 -04:00
Ricardo Wurmus 113146d31c
gnu: r-mumin: Update to 1.47.5. 
* gnu/packages/statistics.scm (r-mumin): Update to 1.47.5.
[propagated-inputs]: Add r-insight.
 2023-03-30 19:21:08 +02:00
Ricardo Wurmus c029bac121
gnu: r-tclust: Update to 1.5-4. 
* gnu/packages/statistics.scm (r-tclust): Update to 1.5-4.
 2023-03-30 19:21:08 +02:00
Ricardo Wurmus aadc68f297
gnu: r-car: Update to 3.1-2. 
* gnu/packages/statistics.scm (r-car): Update to 3.1-2.
 2023-03-30 19:21:08 +02:00
Ricardo Wurmus 25e67fdc4f
gnu: r-robustbase: Update to 0.95-1. 
* gnu/packages/statistics.scm (r-robustbase): Update to 0.95-1.
 2023-03-30 19:21:08 +02:00
Ricardo Wurmus 8a69976f6c
gnu: r-hexbin: Update to 1.28.3. 
* gnu/packages/statistics.scm (r-hexbin): Update to 1.28.3.
 2023-03-30 19:21:08 +02:00
Ricardo Wurmus 042dc3b65d
gnu: r-glmnet: Update to 4.1-7. 
* gnu/packages/statistics.scm (r-glmnet): Update to 4.1-7.
 2023-03-30 19:21:08 +02:00
Ricardo Wurmus 5f416aa0e4
gnu: r-segmented: Update to 1.6-3. 
* gnu/packages/statistics.scm (r-segmented): Update to 1.6-3.
 2023-03-30 19:21:08 +02:00
Ricardo Wurmus 3fa9594824
gnu: r-rcurl: Update to 1.98-1.12. 
* gnu/packages/statistics.scm (r-rcurl): Update to 1.98-1.12.
[inputs]: Remove zlib.
 2023-03-30 19:21:08 +02:00
Ricardo Wurmus 082d5806ec
gnu: r-gtable: Update to 0.3.3. 
* gnu/packages/statistics.scm (r-gtable): Update to 0.3.3.
 2023-03-30 19:21:08 +02:00
Ricardo Wurmus 8ad283c780
gnu: r-rmarkdown: Update to 2.21. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.21.
[propagated-inputs]: Add r-fontawesome.
 2023-03-30 19:21:08 +02:00
Ricardo Wurmus ffcb110ad9
gnu: r-hms: Update to 1.1.3. 
* gnu/packages/statistics.scm (r-hms): Update to 1.1.3.
[propagated-inputs]: Remove r-ellipsis.
 2023-03-30 19:21:08 +02:00
Ricardo Wurmus 8ec84e8895
gnu: r-dbplyr: Update to 2.3.2. 
* gnu/packages/statistics.scm (r-dbplyr): Update to 2.3.2.
 2023-03-30 19:21:08 +02:00
Ricardo Wurmus d8fe4c68a6
gnu: r-dplyr: Update to 1.1.1. 
* gnu/packages/statistics.scm (r-dplyr): Update to 1.1.1.
 2023-03-30 19:21:08 +02:00
Ricardo Wurmus b748ea05cc
gnu: r-gdtools: Update to 0.3.3. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.3.3.
[propagated-inputs]: Remove r-memoise.
 2023-03-30 19:21:07 +02:00
Ricardo Wurmus 6eeebd8021
gnu: r-automap: Update to 1.1-9. 
* gnu/packages/cran.scm (r-automap): Update to 1.1-9.
 2023-03-30 19:21:07 +02:00
Ricardo Wurmus 0c3a344570
gnu: r-mlr3pipelines: Update to 0.4.3. 
* gnu/packages/cran.scm (r-mlr3pipelines): Update to 0.4.3.
 2023-03-30 19:21:07 +02:00
Ricardo Wurmus 9074ca5a74
gnu: r-hardhat: Update to 1.3.0. 
* gnu/packages/cran.scm (r-hardhat): Update to 1.3.0.
[propagated-inputs]: Add r-cli.
 2023-03-30 19:21:07 +02:00
Ricardo Wurmus 9dd47c2f13
gnu: r-distributional: Update to 0.3.2. 
* gnu/packages/cran.scm (r-distributional): Update to 0.3.2.
 2023-03-30 19:21:07 +02:00
Ricardo Wurmus 516753cc10
gnu: r-rlecuyer: Update to 0.3-7. 
* gnu/packages/cran.scm (r-rlecuyer): Update to 0.3-7.
 2023-03-30 19:21:07 +02:00
Ricardo Wurmus dddd4906ad
gnu: r-zyp: Update to 0.11-1. 
* gnu/packages/cran.scm (r-zyp): Update to 0.11-1.
 2023-03-30 19:21:07 +02:00
Ricardo Wurmus 81ea6fa24e
gnu: r-rstantools: Update to 2.3.1. 
* gnu/packages/cran.scm (r-rstantools): Update to 2.3.1.
 2023-03-30 19:21:07 +02:00
Ricardo Wurmus d9e52d2124
gnu: r-caret: Update to 6.0-94. 
* gnu/packages/cran.scm (r-caret): Update to 6.0-94.
 2023-03-30 19:21:07 +02:00
Ricardo Wurmus 4519597494
gnu: r-imager: Update to 0.42.19. 
* gnu/packages/cran.scm (r-imager): Update to 0.42.19.
 2023-03-30 19:21:07 +02:00
Ricardo Wurmus 32db2dc977
gnu: r-parallelly: Update to 1.35.0. 
* gnu/packages/cran.scm (r-parallelly): Update to 1.35.0.
 2023-03-30 19:21:07 +02:00