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Author SHA1 Message Date
Ricardo Wurmus
605fcf8a23
gnu: r-stringr: Update to 1.4.0. 
* gnu/packages/statistics.scm (r-stringr): Update to 1.4.0.
 2019-03-07 23:52:38 +01:00
Ricardo Wurmus
17abcd521a
gnu: r-ranger: Update to 0.11.2. 
* gnu/packages/statistics.scm (r-ranger): Update to 0.11.2.
 2019-03-07 23:52:38 +01:00
Ricardo Wurmus
9066534d4c
gnu: r-openssl: Update to 1.2.2. 
* gnu/packages/statistics.scm (r-openssl): Update to 1.2.2.
 2019-03-07 23:52:38 +01:00
Ricardo Wurmus
a1d9387d82
gnu: r-catools: Update to 1.17.1.2. 
* gnu/packages/statistics.scm (r-catools): Update to 1.17.1.2.
 2019-03-07 23:52:37 +01:00
Ricardo Wurmus
4fadef3ba0
gnu: r-xml: Update to 3.98-1.19. 
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.19.
 2019-03-07 23:52:37 +01:00
Ricardo Wurmus
bc7895e1cf
gnu: r-flexmix: Update to 2.3-15. 
* gnu/packages/statistics.scm (r-flexmix): Update to 2.3-15.
 2019-03-07 23:52:37 +01:00
Ricardo Wurmus
6be62a5a72
gnu: r-irlba: Update to 2.3.3. 
* gnu/packages/statistics.scm (r-irlba): Update to 2.3.3.
 2019-03-07 23:52:37 +01:00
Ricardo Wurmus
b22a20405a
gnu: r-registry: Update to 0.5-1. 
* gnu/packages/statistics.scm (r-registry): Update to 0.5-1.
 2019-03-07 23:52:37 +01:00
Ricardo Wurmus
3db71d065c
gnu: r-r-utils: Update to 2.8.0. 
* gnu/packages/statistics.scm (r-r-utils): Update to 2.8.0.
 2019-03-07 23:52:37 +01:00
Ricardo Wurmus
21886e730b
gnu: r-r-rsp: Update to 0.43.1. 
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.43.1.
 2019-03-07 23:52:37 +01:00
Ricardo Wurmus
ed4100dc96
gnu: r-mvtnorm: Update to 1.0-10. 
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-10.
 2019-03-07 23:52:37 +01:00
Ricardo Wurmus
ebd37b49f9
gnu: r-tidyr: Update to 0.8.3. 
* gnu/packages/statistics.scm (r-tidyr): Update to 0.8.3.
 2019-03-07 23:52:37 +01:00
Ricardo Wurmus
84840deb95
gnu: r-purrr: Update to 0.3.1. 
* gnu/packages/statistics.scm (r-purrr): Update to 0.3.1.
 2019-03-07 23:52:36 +01:00
Ricardo Wurmus
b58220f599
gnu: r-pbapply: Update to 1.4-0. 
* gnu/packages/statistics.scm (r-pbapply): Update to 1.4-0.
 2019-03-07 23:52:36 +01:00
Ricardo Wurmus
e51096b2ea
gnu: r-vgam: Update to 1.1-1. 
* gnu/packages/statistics.scm (r-vgam): Update to 1.1-1.
 2019-03-07 23:52:36 +01:00
Ricardo Wurmus
aeb11b7549
gnu: r-ggthemes: Update to 4.1.0. 
* gnu/packages/statistics.scm (r-ggthemes): Update to 4.1.0.
 2019-03-07 23:52:36 +01:00
Ricardo Wurmus
d235cf7268
gnu: r-shiny: Update to 1.2.0. 
* gnu/packages/cran.scm (r-shiny): Update to 1.2.0.
[arguments]: Adjust processing of minified JavaScript.
 2019-03-07 23:52:36 +01:00
Ricardo Wurmus
83ef38b038
gnu: r-epi: Update to 2.35. 
* gnu/packages/cran.scm (r-epi): Update to 2.35.
 2019-03-07 23:52:36 +01:00
Ricardo Wurmus
75cbc80037
gnu: r-network: Update to 1.14-377. 
* gnu/packages/cran.scm (r-network): Update to 1.14-377.
[propagated-inputs]: Add r-magrittr and r-tibble.
 2019-03-07 23:52:36 +01:00
Ricardo Wurmus
fadc49c6e5
gnu: r-vegan: Update to 2.5-4. 
* gnu/packages/cran.scm (r-vegan): Update to 2.5-4.
 2019-03-07 23:52:36 +01:00
Ricardo Wurmus
d1c2fd8eeb
gnu: r-future-apply: Update to 1.2.0. 
* gnu/packages/cran.scm (r-future-apply): Update to 1.2.0.
 2019-03-07 23:52:36 +01:00
Ricardo Wurmus
6e8b38d3e8
gnu: Add r-furrr. 
* gnu/packages/cran.scm (r-furrr): New variable.
 2019-03-07 23:52:35 +01:00
Ricardo Wurmus
f0bff69873
gnu: Add r-survey. 
* gnu/packages/cran.scm (r-survey): New variable.
 2019-03-07 23:52:35 +01:00
Ricardo Wurmus
dab3e92c94
gnu: Add r-magick. 
* gnu/packages/cran.scm (r-magick): New variable.
 2019-03-07 23:52:35 +01:00
Ricardo Wurmus
3f22a115bd
gnu: Add r-ellipsis. 
* gnu/packages/cran.scm (r-ellipsis): New variable.
 2019-03-07 23:52:35 +01:00
Pierre Neidhardt
d748cb5f47
gnu: Add autorandr. 
* gnu/packages/xdisorg.scm (autorandr): New variable.
 2019-03-07 22:23:38 +01:00
Julien Lepiller
945723be97
gnu: php: Update to 7.3.3. 
* gnu/packages/php.scm (php): Update to 7.3.3.
 2019-03-07 21:18:30 +01:00
Efraim Flashner
dcf4d01f30
gnu: libmicrohttpd: Enable parallel tests. 
* gnu/packages/gnunet.scm (libmicrohttpd)[arguments]: Don't disable
parallel tests.
 2019-03-07 22:00:53 +02:00
Efraim Flashner
c4bfce994e
gnu: libmicrohttpd: Update to 0.9.63. 
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.63.
[arguments]: Remove custom phase to add missing LDFLAGS.
 2019-03-07 22:00:53 +02:00
Efraim Flashner
0ef54303f3
gnu: c-graph: Update to 2.0.1. 
* gnu/packages/maths.scm (c-graph): Update to 2.0.1.
 2019-03-07 22:00:52 +02:00
Ludovic Courtès
0ae735bcc8
activation: Build account databases with (gnu build accounts). 
* gnu/build/activation.scm (enumerate, current-users, current-groups)
(add-group, add-user, modify-user, ensure-user): Remove.
(activate-users+groups)[touch, activate-user]: Remove.
[make-home-directory]: New procedure.
Rewrite in terms of 'user+group-databases', 'write-group', etc.
* gnu/build/install.scm (directives): Remove "/root".
* gnu/system/shadow.scm (account-activation): Remove (setenv "PATH" ...)
expression, which is now unneeded.
 2019-03-07 20:05:09 +01:00
Ludovic Courtès
ec600e4544
Add (gnu build accounts). 
* gnu/build/accounts.scm, tests/accounts.scm: New files.
* Makefile.am (SCM_TESTS): Add tests/accounts.scm.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add build/accounts.scm.
 2019-03-07 20:05:09 +01:00
Ludovic Courtès
6061d01512
activation: Operate on <user-account> and <user-group> records. 
* gnu/system/accounts.scm (sexp->user-group, sexp->user-account): New
procedures.
* gnu/system/shadow.scm (account-activation): Call them in the arguments
to 'activate-users+groups'.
(account-shepherd-service): Likewise.
* gnu/build/activation.scm (activate-users+groups): Expect a list of
<user-account> and a list of <user-group>.  Replace uses of 'match' on
tuples with calls to record accessors.
(activate-user-home): Likewise.
 2019-03-07 20:05:09 +01:00
Ludovic Courtès
f6f67b87c0
system: Add (gnu system accounts). 
The (gnu system accounts) module is meant to be used both on the build-
and on the host-side.

* gnu/system/shadow.scm <top level>: Call 'default-shell'.
(<user-account>, <user-group>): Move to...
* gnu/system/accounts.scm: ... here.  New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add system/accounts.scm.
 2019-03-07 20:04:02 +01:00
Pierre Neidhardt
b60e9fb82f
gnu: fuseiso: Fix typo in description. 
* gnu/packages/linux.scm (fuseiso)[description]: Fix typo.
 2019-03-07 17:12:46 +01:00
Tobias Geerinckx-Rice
1e1142d8cb
gnu: Add nullmailer. 
* gnu/packages/mail.scm (nullmailer): New public variable.
 2019-03-07 15:39:46 +01:00
Ricardo Wurmus
3189fad217
gnu: neovim: Let build phase return #T. 
* gnu/packages/vim.scm (neovim)[arguments]: Return #T from "patch-tic" phase.
 2019-03-07 13:39:45 +01:00
Ricardo Wurmus
3b296475bf
gnu: cd-hit: Support longer sequences. 
* gnu/packages/bioinformatics.scm (cd-hit)[arguments]: Pass MAX_SEQ to make
flags.
 2019-03-07 13:38:01 +01:00
Ricardo Wurmus
237ee6f2b2
gnu: python2-fastlmm: Disable tests. 
* gnu/packages/machine-learning.scm (python2-fastlmm)[arguments]: Disable
tests.
 2019-03-07 13:37:58 +01:00
Rutger Helling
9fd6ad3e35
gnu: wireguard: Update to 0.0.20190227. 
* gnu/packages/vpn.scm (wireguard): Update to 0.0.20190227.
[arguments]: Disable tests.
 2019-03-07 12:23:43 +01:00
Rutger Helling
9cb4bda222
gnu: nftables: Update to 0.9.0. 
* gnu/packages/linux.scm (nftables): Update to 0.9.0.
[arguments]: Add "--disable-man-doc" configure flag.
 2019-03-07 12:08:21 +01:00
Kei Kebreau
ccf2446730
gnu: minetest: Update to 5.0.0. 
* gnu/packages/games.scm (minetest-data, minetest): Update to 5.0.0.
 2019-03-07 05:31:19 -05:00
Gábor Boskovits
0a10abf73e
gnu: neovim: Fix #34616. 
This fixes a segmentation fault in neovim, where an error return value
is passed in as a pointer.

* gnu/packages/vim.scm (neovim)[arguments](phases): Add 'patch-tic phase.
 2019-03-07 11:08:31 +01:00
Gábor Boskovits
2702aa9136
gnu: unibilium: Update to 2.0.0. 
* gnu/packages/terminal.scm (unibilium): Update to 2.0.0.
[native-inputs]: Add perl.
 2019-03-07 09:48:03 +01:00
Tobias Geerinckx-Rice
abe6e670d3
gnu: sane-backends-minimal: Fix USB support. 
* gnu/packages/scanner.scm (sane-backends-minimal)[inputs]: Replace
libusb-compat with libusb.
[arguments]: Disable tests that require USB access.
 2019-03-07 02:13:26 +01:00
Ludovic Courtès
d40ec4a0d0
pack: Add '--save-provenance'. 
* guix/scripts/pack.scm (show-help, %options): Add '--save-provenance'.
(guix-pack)[manifest-from-args]: Honor it.
* doc/guix.texi (Invoking guix pack): Document it.
 2019-03-07 00:00:18 +01:00
Ludovic Courtès
2cb658a9a7
describe: Add 'package-provenance'. 
* guix/scripts/package.scm (package-provenance): Move to...
* guix/describe.scm (package-provenance): ... here.
 2019-03-07 00:00:18 +01:00
Caleb Ristvedt
a4678c6ba1
database: Make 'register-items' transactional. 
* guix/store/database.scm (SQLITE_BUSY, register-output-sql): New variables.
(add-references): Don't try finalizing after each use, only after all the
uses (otherwise a finalized statement would be used if #:cache? was #f).
(call-with-transaction): New procedure.
(register-items): Use call-with-transaction to prevent broken intermediate
states from being visible.

* .dir-locals.el (call-with-transaction): indent it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-07 00:00:18 +01:00
Mark H Weaver
274fa49100
gnu: linux-libre: Update to 5.0. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.
(%linux-libre-hash): Update hash.
(%linux-libre-4.20-patches): Rename to ...
(%linux-libre-5.0-patches): ... this.
(linux-libre, linux-libre-arm-generic, linux-libre-arm-omap2plus):
Use %linux-libre-5.0-patches instead of %linux-libre-4.20-patches.
* gnu/packages/aux-files/linux-libre/4.20-arm.conf,
gnu/packages/aux-files/linux-libre/4.20-arm64.conf,
gnu/packages/aux-files/linux-libre/4.20-i686.conf,
gnu/packages/aux-files/linux-libre/4.20-x86_64.conf: Delete files.
* gnu/packages/aux-files/linux-libre/5.0-arm.conf,
gnu/packages/aux-files/linux-libre/5.0-arm64.conf,
gnu/packages/aux-files/linux-libre/5.0-i686.conf,
gnu/packages/aux-files/linux-libre/5.0-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Adjust accordingly.
 2019-03-06 17:51:55 -05:00
Mark H Weaver
9870f3ec61
gnu: linux-libre@4.19: Update to 4.19.27. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.27.
(%linux-libre-4.19-hash): Update hash.
 2019-03-06 17:51:12 -05:00