Commit graph

52162 commits

Author SHA1 Message Date
Ricardo Wurmus
6f5415d5f6
gnu: r-variantfiltering: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.22.0.
2019-12-15 15:39:05 +01:00
Ricardo Wurmus
053a2127bc
gnu: r-genomegraphs: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-genomegraphs): Update to 1.46.0.
2019-12-15 15:39:05 +01:00
Ricardo Wurmus
e13f977312
gnu: r-wavetiling: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-wavetiling): Update to 1.28.0.
2019-12-15 15:39:05 +01:00
Ricardo Wurmus
e2f481dad0
gnu: r-variancepartition: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.16.0.
2019-12-15 15:39:05 +01:00
Ricardo Wurmus
0b0906c845
gnu: r-htqpcr: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.40.0.
2019-12-15 15:39:04 +01:00
Ricardo Wurmus
989be6df99
gnu: r-unifiedwmwqpcr: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.22.0.
2019-12-15 15:39:04 +01:00
Ricardo Wurmus
0726645eca
gnu: r-genefilter: Update to 1.68.0.
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.68.0.
[propagated-inputs]: Remove r-s4vectors and add r-biocgenerics.
2019-12-15 15:39:04 +01:00
Ricardo Wurmus
867018e138
gnu: r-deseq2: Update to 1.26.0.
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.26.0.
2019-12-15 15:39:04 +01:00
Ricardo Wurmus
ebc81e300c
gnu: r-dexseq: Update to 1.32.0.
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.32.0.
2019-12-15 15:39:04 +01:00
Ricardo Wurmus
12c4555d44
gnu: r-annotationforge: Update to 1.28.0.
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.28.0.
2019-12-15 15:39:04 +01:00
Ricardo Wurmus
33a2acb757
gnu: r-rbgl: Update to 1.62.1.
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.62.1.
2019-12-15 15:39:04 +01:00
Ricardo Wurmus
d2661841be
gnu: r-gseabase: Update to 1.48.0.
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.48.0.
2019-12-15 15:39:04 +01:00
Ricardo Wurmus
4afcf941d2
gnu: r-category: Update to 2.52.1.
* gnu/packages/bioinformatics.scm (r-category): Update to 2.52.1.
2019-12-15 15:39:04 +01:00
Ricardo Wurmus
545730891e
gnu: r-gostats: Update to 2.52.0.
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.52.0.
2019-12-15 15:39:04 +01:00
Ricardo Wurmus
f29c9f0d33
gnu: r-shortread: Update to 1.44.0.
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.44.0.
2019-12-15 15:39:04 +01:00
Ricardo Wurmus
58fd68b299
gnu: r-systempiper: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.20.0.
2019-12-15 15:39:03 +01:00
Ricardo Wurmus
f8f815667d
gnu: r-grohmm: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.20.0.
2019-12-15 15:39:03 +01:00
Ricardo Wurmus
74d59b6748
gnu: r-biocviews: Update to 1.54.0.
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.54.0.
2019-12-15 15:39:03 +01:00
Ricardo Wurmus
ef96154433
gnu: r-biocstyle: Update to 2.14.2.
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.14.2.
2019-12-15 15:39:03 +01:00
Ricardo Wurmus
7758d5205c
gnu: r-bioccheck: Update to 1.22.0.
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.22.0.
2019-12-15 15:39:03 +01:00
Ricardo Wurmus
d37daf8929
gnu: r-s4vectors: Update to 0.24.1.
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.24.1.
2019-12-15 15:39:03 +01:00
Ricardo Wurmus
d2723484f6
gnu: r-iranges: Update to 2.20.1.
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.20.1.
2019-12-15 15:39:03 +01:00
Ricardo Wurmus
937f3a46eb
gnu: r-genomeinfodb: Update to 1.22.0.
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.22.0.
2019-12-15 15:39:03 +01:00
Ricardo Wurmus
da03fa3c90
gnu: r-edger: Update to 3.28.0.
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.28.0.
2019-12-15 15:39:03 +01:00
Ricardo Wurmus
8f5d2c3abc
gnu: r-variantannotation: Update to 1.32.0.
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.32.0.
2019-12-15 15:39:03 +01:00
Ricardo Wurmus
eea491e5c6
gnu: r-limma: Update to 3.42.0.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.42.0.
2019-12-15 15:39:03 +01:00
Ricardo Wurmus
da6edb199d
gnu: r-xvector: Update to 0.26.0.
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.26.0.
2019-12-15 15:39:02 +01:00
Ricardo Wurmus
0202b13e8b
gnu: r-genomicranges: Update to 1.38.0.
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.38.0.
2019-12-15 15:39:02 +01:00
Ricardo Wurmus
8d1c3666d7
gnu: r-biobase: Update to 2.46.0.
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.46.0.
2019-12-15 15:39:02 +01:00
Ricardo Wurmus
de9ae3e7b1
gnu: r-annotationdbi: Update to 1.48.0.
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.48.0.
2019-12-15 15:39:02 +01:00
Ricardo Wurmus
68a9d9f26a
gnu: r-biomart: Update to 2.42.0.
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.42.0.
[propagated-inputs]: Add r-biocfilecache, r-openssl, and r-rappdirs; remove
r-rcurl.
2019-12-15 15:39:02 +01:00
Ricardo Wurmus
5854a4a265
gnu: r-biocparallel: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.20.0.
2019-12-15 15:39:02 +01:00
Ricardo Wurmus
15cd3f6ef5
gnu: r-biostrings: Update to 2.54.0.
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.54.0.
2019-12-15 15:39:02 +01:00
Ricardo Wurmus
e1d681e2af
gnu: r-rsamtools: Update to 2.2.1.
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.2.1.
2019-12-15 15:39:02 +01:00
Ricardo Wurmus
4ada4fb745
gnu: r-delayedarray: Update to 0.12.0.
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.12.0.
2019-12-15 15:39:02 +01:00
Ricardo Wurmus
264db038c6
gnu: r-summarizedexperiment: Update to 1.16.0.
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.16.0.
2019-12-15 15:39:02 +01:00
Ricardo Wurmus
55e515d206
gnu: r-genomicalignments: Update to 1.22.1.
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.22.1.
2019-12-15 15:39:01 +01:00
Ricardo Wurmus
15187da9e7
gnu: r-rtracklayer: Update to 1.46.0.
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.46.0.
2019-12-15 15:39:01 +01:00
Ricardo Wurmus
9fec340391
gnu: r-genomicfeatures: Update to 1.38.0.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.38.0.
2019-12-15 15:39:01 +01:00
Ricardo Wurmus
323f42b2ca
gnu: r-topgo: Update to 2.37.0.
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.37.0.
2019-12-15 15:39:01 +01:00
Ricardo Wurmus
e3a2b96c80
gnu: r-bsgenome: Update to 1.54.0.
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.54.0.
2019-12-15 15:39:01 +01:00
Ricardo Wurmus
bca1c45e4e
gnu: r-impute: Update to 1.60.0.
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.60.0.
2019-12-15 15:39:01 +01:00
Ricardo Wurmus
b590742362
gnu: r-seqpattern: Update to 1.18.0.
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.18.0.
2019-12-15 15:39:01 +01:00
Ricardo Wurmus
e06b34e8c6
gnu: r-genomation: Update to 1.18.0.
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.18.0.
2019-12-15 15:39:01 +01:00
Ricardo Wurmus
a9790190d1
gnu: r-seqlogo: Update to 1.52.0.
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.52.0.
2019-12-15 15:39:01 +01:00
Ricardo Wurmus
a5f9b30338
gnu: r-motifrg: Update to 1.30.0.
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.30.0.
2019-12-15 15:39:01 +01:00
Ricardo Wurmus
2f15045400
gnu: r-zlibbioc: Update to 1.32.0.
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.32.0.
2019-12-15 15:39:01 +01:00
Ricardo Wurmus
108c03a8eb
gnu: r-rhtslib: Update to 1.18.0.
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.18.0.
[propagated-inputs]: Add curl.
2019-12-15 15:39:01 +01:00
Ricardo Wurmus
7b6c008960
gnu: r-bamsignals: Update to 1.18.0.
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.18.0.
2019-12-15 15:39:00 +01:00
Ricardo Wurmus
f375d74072
gnu: r-rcas: Update to 1.12.0.
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.12.0.
2019-12-15 15:39:00 +01:00