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Author SHA1 Message Date
Xinglu Chen
a866667f55
gnu: Add emacs-org-inline-pdf. 
* gnu/packages/emacs-xyz.scm (emacs-org-inline-pdf): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-26 14:47:46 +02:00
Xinglu Chen
bc251bc7e2
gnu: emacs-transient: Update to 0.3.4. 
* gnu/packages/emacs-xyz.scm (emacs-transient): Update to 0.3.4.
[arguments]<#:phases>: Don’t return #t, this will be redundant once
core-updates gets merged.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-26 14:46:19 +02:00
Xinglu Chen
a5c9843cfe
gnu: emacs-magit: Update to 3.0.0. 
* gnu/packages/emacs-xyz.scm (emacs-magit): Update to 3.0.0.
[arguments]<#:phases>: Don’t return #t, this will be redundant once the
core-updates branch has been merged.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-26 14:45:57 +02:00
Xinglu Chen
93a5505f12
gnu: emacs-forge: Update to 0.2.0. 
* gnu/packages/emacs-xyz.scm (emacs-forge): Update to 0.2.0.
[arguments]<#:phases>: Don’t return #t at the end of phases, this will be
redundant once core-updates gets merged.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-26 14:44:19 +02:00
Efraim Flashner
c5f7203e3e
gnu: minimap2: Install more files. 
* gnu/packages/bioinformatics.scm (minimap2)[arguments]: Add modules.
Adjust custom 'install phase to also install library, headers and a
pkg-config file.
 2021-05-26 15:22:10 +03:00
Efraim Flashner
36a90d0637
gnu: minimap2: Update to 2.18. 
* gnu/packages/bioinformatics.scm (minimap2): Update to 2.18.
[source]: Remove patch.
* gnu/packages/patches/minimap2-aarch64-support.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2021-05-26 15:22:10 +03:00
Lars-Dominik Braun
b085abbeb8
gnu: Add r-bayesfactor. 
* gnu/packages/statistics.scm (r-bayesfactor): New variable.
 2021-05-26 14:05:16 +02:00
Lars-Dominik Braun
3ea32f5bcf
gnu: Add r-effects. 
* gnu/packages/statistics.scm (r-effects): New variable.
 2021-05-26 14:05:16 +02:00
Lars-Dominik Braun
e53ecc6087
gnu: Add r-logspline. 
* gnu/packages/statistics.scm (r-logspline): New variable.
 2021-05-26 14:05:16 +02:00
Lars-Dominik Braun
6c7aafbedf
gnu: Add r-kknn. 
* gnu/packages/statistics.scm (r-kknn): New variable.
 2021-05-26 14:05:15 +02:00
Lars-Dominik Braun
fef452b13f
gnu: Add r-hypergeo. 
* gnu/packages/cran.scm (r-hypergeo): New variable.
 2021-05-26 14:05:15 +02:00
Lars-Dominik Braun
1af2da50bf
gnu: Add r-elliptic. 
* gnu/packages/cran.scm (r-elliptic): New variable.
 2021-05-26 14:05:15 +02:00
Lars-Dominik Braun
1ae67e6735
gnu: Add r-contfrac. 
* gnu/packages/cran.scm (r-contfrac): New variable.
 2021-05-26 14:05:15 +02:00
Roel Janssen
f921981536
gnu: Add r-decipher. 
* gnu/packages/bioconductor.scm (r-decipher): New variable.
 2021-05-26 13:31:20 +02:00
Roel Janssen
99873359ed
gnu: Add r-deepsnv. 
* gnu/packages/bioconductor.scm (r-deepsnv): New variable.
 2021-05-26 13:13:56 +02:00
Roel Janssen
834f649590
gnu: Add r-geneoverlap. 
* gnu/packages/bioconductor.scm (r-geneoverlap): New variable.
 2021-05-26 13:09:34 +02:00
Mathieu Othacehe
3d704fafba
gnu: cuirass: Update to 1.0.0-20.524b81d. 
* gnu/packages/ci.scm (cuirass): Update to 1.0.0-20.524b81d.
 2021-05-26 11:48:26 +02:00
Guillaume Le Vaillant
63962f9b6c
gnu: Add minimodem. 
* gnu/packages/radio.scm (minimodem): New variable.
 2021-05-26 10:31:59 +02:00
Roel Janssen
94b8ad4490
gnu: Add r-chipseeker. 
* gnu/packages/bioconductor.scm (r-chipseeker): New variable.
 2021-05-26 10:21:32 +02:00
Roel Janssen
5aa68a9408
gnu: Add r-model4you. 
* gnu/packages/cran.scm (r-model4you): New variable.
 2021-05-26 10:00:51 +02:00
Roel Janssen
3f2a4b0980
gnu: Add r-pvclust. 
* gnu/packages/cran.scm (r-pvclust): New variable.
 2021-05-26 09:52:12 +02:00
Roel Janssen
9048e7f3b4
gnu: Add r-bsgenome-btaurus-ucsc-bostau8. 
* gnu/packages/bioconductor.scm (r-bsgenome-btaurus-ucsc-bostau8): New
  variable.
 2021-05-26 09:42:01 +02:00
Roel Janssen
af163badb4
gnu: Add r-phantompeakqualtools. 
* gnu/packages/bioinformatics.scm (r-phantompeakqualtools): New variable.
 2021-05-26 09:34:37 +02:00
Roel Janssen
b1fee8a003
gnu: Add r-spp. 
* gnu/packages/bioinformatics.scm (r-spp): New variable.
 2021-05-26 09:29:01 +02:00
Roel Janssen
b84ead8c04
gnu: Add r-aneufinder. 
* gnu/packages/bioconductor.scm (r-aneufinder): New variable.
 2021-05-26 09:13:54 +02:00
Roel Janssen
189311660b
gnu: Add r-aneufinderdata. 
* gnu/packages/bioconductor.scm (r-aneufinderdata): New variable.
 2021-05-26 09:13:08 +02:00
Leo Famulari
458126a237
gnu: Add rsync 3.2.3. 
*  gnu/packages/rsync.scm (rsync-next): New variable.
 2021-05-25 16:32:52 -04:00
Leo Famulari
d366557b7b
gnu: nginx: Update to 1.21.0 [fixes CVE-2021-23017]. 
* gnu/packages/web.scm (nginx, nginx-documentation): Update to 1.21.0.
 2021-05-25 12:44:09 -04:00
Efraim Flashner
0ffac75ece
gnu: qhull: Build position independent. 
* gnu/packages/maths.scm (qhull)[arguments]: Add configure-flag to build
code position independent.
 2021-05-25 17:24:58 +03:00
Mathieu Othacehe
d2a8b72b2f
gnu: cuirass: Update to 1.0.0-19.e1382f0. 
* gnu/packages/ci.scm (cuirass): Update to 1.0.0-19.e1382f0.
 2021-05-25 15:15:56 +02:00
Efraim Flashner
c942e17c29
gnu: qhull: Link binaries to shared library. 
This drops the package size by nearly 60%.

* gnu/packages/maths.scm (qhull)[arguments]: Add configure-flag to link
binaries to shared library.
 2021-05-25 15:50:57 +03:00
Roel Janssen
dc85100481
gnu: Add perl-set-intervaltree. 
* gnu/packages/perl.scm (perl-set-intervaltree): New variable.
 2021-05-25 14:31:06 +02:00
Roel Janssen
ac30a53c6a
gnu: Add perl-log-message-simple 
* gnu/packages/perl.scm (perl-log-message-simple): New variable.
 2021-05-25 14:20:07 +02:00
Roel Janssen
5bfb84b8cf
gnu: Add perl-log-message. 
* gnu/packages/perl.scm (perl-log-message): New variable.
 2021-05-25 14:19:09 +02:00
Roel Janssen
fe578ee51a
gnu: Add perl-extutils-manifest. 
* gnu/packages/perl.scm (perl-extutils-manifest): New variable.
 2021-05-25 14:08:34 +02:00
Roel Janssen
906cdbd4f9
gnu: Add perl-data-uuid. 
* gnu/packages/perl.scm (perl-data-uuid): New variable.
 2021-05-25 13:56:58 +02:00
Mathieu Othacehe
414e41de64
gnu: cuirass: Update to 1.0.0-18.b1abb44. 
* gnu/packages/ci.scm (cuirass): Update to 1.0.0-18.b1abb44.
 2021-05-25 13:55:49 +02:00
Roel Janssen
bc13e79476
gnu: Add perl-const-fast. 
* gnu/packages/perl.scm (perl-const-fast): New variable.
 2021-05-25 13:50:26 +02:00
Nicolas Goaziou
a154048d98
gnu: emacs-shell-command+: Update to 2.2.0. 
* gnu/packages/emacs-xyz.scm (emacs-shell-command+): Update to 2.2.0.
 2021-05-25 12:25:59 +02:00
nixo
a68cca64cd
gnu: Add kanatest. 
* gnu/packages/education.scm (kanatest): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-25 12:11:18 +02:00
Xinglu Chen
a443181d7b
gnu: emacs-vertico: Update to 0.11. 
* gnu/packages/emacs-xyz.scm (emacs-vertico): Update to 0.11.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-25 12:09:26 +02:00
Solene Rapenne via Guix-patches via
b1bbeeafb4
gnu: openttd-engine: Update to 1.11.2. 
* gnu/packages/games.scm (openttd-engine): Update to 1.11.2.
[build-system]: Switch to CMake.
[arguments]: Enable tests.
(openttd)[arguments]<#:configure-flags>: Use CMake flags.
<#:phases>: Remove `configure'.  Copy assets file before check step
to enable tests.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-25 12:07:32 +02:00
Nicolas Goaziou
f820315ddd
gnu: emacs-xyz.scm: Add missing copyright line. 2021-05-25 11:37:26 +02:00
David Dashyan
ae88e30a0f
gnu: Add emacs-geiser-racket. 
* gnu/packages/emacs-xyz.scm (emacs-geiser-racket): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-25 11:33:57 +02:00
Solene Rapenne via Guix-patches via
7c1065030d
gnu: lagrange: Update to 1.4.2. 
* gnu/packages/web-browsers.scm (lagrange): Update to 1.4.2.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-25 11:31:18 +02:00
Alexandr Vityazev
3c52c96ca2
gnu: Remove unnecessary patches for emacs-geiser. 
* gnu/packages/patches/emacs-geiser-autoload-activate-implementation.patch:
* gnu/packages/patches/emacs-geiser-guile-auto-activate.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Apply file removal.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-25 11:25:00 +02:00
Alexandr Vityazev
68b6ea5591
gnu: emacs-geiser-guile: Update to 0.17. 
* gnu/packages/emacs-xyz (emacs-geiser-guile): Update to 0.17.
[patches]: Remove.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-25 11:24:09 +02:00
Alexandr Vityazev
6602d89a14
gnu: emasc-geiser: Update to 0.16. 
* gnu/packages/emacs-xyz (emacs-geiser): Update to 0.16.
[patches]: Remove.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-25 11:23:51 +02:00
Sharlatan Hellseher
3a89ff123a
gnu: Add cl-djula. 
* gnu/packages/lisp-xyz.scm: (sbcl-djula, ecl-djula, cl-djula): New
  variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-05-25 11:16:55 +02:00
Sharlatan Hellseher
a0dcb1aa8f
gnu: Add cl-slice. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-slice, ecl-cl-slice, cl-slice): New
  variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-05-25 11:09:11 +02:00