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126906 commits

Author SHA1 Message Date
Ricardo Wurmus 2531eac414
gnu: r-rtcga: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-rtcga): Update to 1.32.0.

Change-Id: I34d49096aee9329730b009209d60471f0b97ce1a
2023-11-03 22:49:17 +01:00
Ricardo Wurmus 1e454c32d7
gnu: r-rsamtools: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-rsamtools): Update to 2.18.0.
[propagated-inputs]: Add r-zlibbioc.

Change-Id: I5276250da7f390358cb62e3934aedf61b4a36d67
2023-11-03 22:49:17 +01:00
Ricardo Wurmus 68bdc0a860
gnu: r-rhdf5filters: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.14.0.
[native-inputs]: Remove r-biocstyle and r-rmarkdown.

Change-Id: I14e7f0e2c5986c35b9c6ca36dcb3f4127cf348aa
2023-11-03 22:49:17 +01:00
Ricardo Wurmus 0e159537dd
gnu: r-rhdf5: Update to 2.46.0.
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.46.0.
[propagated-inputs]: Add r-s4vectors.

Change-Id: I6423f6b8a92b2053039c2af7f52cbfe047d9f75f
2023-11-03 22:49:17 +01:00
Ricardo Wurmus 31d236ad8e
gnu: r-regioner: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.34.0.

Change-Id: I1b8b0d031065a2462d9a812a2ceccf58bf31ff37
2023-11-03 22:49:17 +01:00
Ricardo Wurmus e8e0f0e5b9
gnu: r-rcas: Update to 1.28.2.
* gnu/packages/bioconductor.scm (r-rcas): Update to 1.28.2.

Change-Id: I2406be8ad960d235124eabd3d1dab9605994d707
2023-11-03 22:49:17 +01:00
Ricardo Wurmus 45b4cdb52e
gnu: r-rbgl: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-rbgl): Update to 1.78.0.

Change-Id: I2f99033a91cfd9085df7388bb51418887a70735d
2023-11-03 22:49:16 +01:00
Ricardo Wurmus ff6b2e31c4
gnu: r-protgenerics: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-protgenerics): Update to 1.34.0.

Change-Id: Iede0129b8b5a5164f7efe982d4863e61e526444b
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 42504ecfc8
gnu: r-piano: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-piano): Update to 2.18.0.

Change-Id: I3511dae77061b5fca24b8b077b1fba34d613be7c
2023-11-03 22:49:16 +01:00
Ricardo Wurmus fd0e3d812c
gnu: r-pfamanalyzer: Update to 1.2.0.
* gnu/packages/bioconductor.scm (r-pfamanalyzer): Update to 1.2.0.

Change-Id: I31ab67f4ac5b5846038e4896fc44a65da8717b27
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 409d6d340d
gnu: r-pcamethods: Update to 1.94.0.
* gnu/packages/bioconductor.scm (r-pcamethods): Update to 1.94.0.

Change-Id: I67ae7bd85bf7353b038f85842b930337878ea313
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 81172ff685
gnu: r-pcaexplorer: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-pcaexplorer): Update to 2.28.0.

Change-Id: If0d0369c364c5c665a9cdfe71fb6ce7c4b466b40
2023-11-03 22:49:16 +01:00
Ricardo Wurmus fab197151b
gnu: r-oscope: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-oscope): Update to 1.32.0.

Change-Id: Ie2f593d31f51d6fd4954d6eaa633a60e02f8cbee
2023-11-03 22:49:16 +01:00
Ricardo Wurmus d02feac2f1
gnu: r-organismdbi: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.44.0.

Change-Id: I8c018e323daab03e758e8690b31a75c06ae7d748
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 41f7fc3ef5
gnu: r-organism-dplyr: Update to 1.30.1.
* gnu/packages/bioconductor.scm (r-organism-dplyr): Update to 1.30.1.

Change-Id: Ib8c833cd10fa5cc845c954b97a587279cb29127f
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 23379de4c9
gnu: r-mzr: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.36.0.

Change-Id: I72f45ac3dbfea48e1327ab6bf87d5ee3eebd5b3d
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 376c30b09f
gnu: r-mzid: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-mzid): Update to 1.40.0.

Change-Id: Ie85887d844236cc8217f7ccabec284fc4040d3f7
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 24a57583ae
gnu: r-msnid: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-msnid): Update to 1.36.0.

Change-Id: I2461051259efcfa92694569689a374a60224e07c
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 31291d7aa1
gnu: r-msnbase: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.28.0.

Change-Id: If193d2756124c63fb308c62c4803378641b5a5d1
2023-11-03 22:49:16 +01:00
Ricardo Wurmus baa4a2629e
gnu: r-msa: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-msa): Update to 1.34.0.

Change-Id: Ief67a7396f222a640a3c481cc1ac66c725204e00
2023-11-03 22:49:16 +01:00
Ricardo Wurmus a1e7f3f4c8
gnu: r-mutationalpatterns: Update to 3.12.0.
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.12.0.

Change-Id: Ia0dd49b80c91865677cdba3f03f6acabfb5b155f
2023-11-03 22:49:16 +01:00
Ricardo Wurmus db457fe95f
gnu: r-muscat: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-muscat): Update to 1.16.0.

Change-Id: Idf30d38c285a0fddd2aab924ca3017dfd25b587a
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 8288c11c51
gnu: r-mmuphin: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-mmuphin): Update to 1.16.0.

Change-Id: Ib8d6583456e76abea75d08dc21aaedffe5a46053
2023-11-03 22:49:16 +01:00
Ricardo Wurmus b4b48541f9
gnu: r-mfuzz: Update to 2.62.0.
* gnu/packages/bioconductor.scm (r-mfuzz): Update to 2.62.0.

Change-Id: If08902a17ecf2be089677634ee9d348e46295245
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 6faabe3a9f
gnu: r-methylkit: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-methylkit): Update to 1.28.0.

Change-Id: I3040045d082d80a8e1f1e68691ad3c7bc561d3d3
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 7b4893ddb8
gnu: r-metaneighbor: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-metaneighbor): Update to 1.22.0.

Change-Id: I24a17f7af9ccfb6a942bd0f24b187948d16bc07a
2023-11-03 22:49:16 +01:00
Ricardo Wurmus b4421f7099
gnu: r-metagenomeseq: Update to 1.43.0.
* gnu/packages/bioconductor.scm (r-metagenomeseq): Update to 1.43.0.

Change-Id: Ia7e010752cb480bec3270f79dca748e2ccf4c53b
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 9be6759f41
gnu: r-mdqc: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-mdqc): Update to 1.64.0.

Change-Id: If60e2e8f16e27362542298799dd30c70f91840fe
2023-11-03 22:49:16 +01:00
Ricardo Wurmus d485c6e39a
gnu: r-maser: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-maser): Update to 1.20.0.

Change-Id: I02074e2ef18c4e2b3414d1d1ac3b325b3a28ee8b
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 9f7a451e6b
gnu: r-manor: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-manor): Update to 1.74.0.

Change-Id: I646db2726748aefdd8f6a437571cd5e9ad613862
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 30cecc4883
gnu: r-makecdfenv: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-makecdfenv): Update to 1.78.0.

Change-Id: Ia37c4a66000d5c781baf2cce4e226aeba7e01d38
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 35d10e3429
gnu: r-made4: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-made4): Update to 1.76.0.

Change-Id: I867a25181c61abbb9d65b0c53dc9cbad9d96a293
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 7a12d712eb
gnu: r-maaslin2: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-maaslin2): Update to 1.16.0.

Change-Id: Ib2bcd9049ffccf548295a6f1100a0b1f636f2a31
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 3e7eeef0db
gnu: r-limma: Update to 3.58.1.
* gnu/packages/bioconductor.scm (r-limma): Update to 3.58.1.
[propagated-inputs]: Add r-statmod.
[native-inputs]: Add r-knitr.

Change-Id: I6f0b489fa71dfa5b359fece946493091f828795e
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 01220bcd00
gnu: r-lfa: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-lfa): Update to 2.2.0.

Change-Id: I940fd19d4baf1ba2b5b1a5cb35b4adfc6679a273
2023-11-03 22:49:16 +01:00
Ricardo Wurmus 277cfebf79
gnu: r-lea: Update to 3.14.0.
* gnu/packages/bioconductor.scm (r-lea): Update to 3.14.0.

Change-Id: I4a04bc3ea1e348825d40a60e12de6dffc2b2b1ef
2023-11-03 22:49:16 +01:00
Ricardo Wurmus c08b34c0e8
gnu: r-keggrest: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.42.0.

Change-Id: Ia2b21e89ede37cb437e894440869d5b9226f4244
2023-11-03 22:49:15 +01:00
Ricardo Wurmus 4b85fc7175
gnu: r-interactivedisplaybase: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-interactivedisplaybase): Update to 1.40.0.

Change-Id: Iac0d06e6e39b840ea35dbd0b219bc084bdb61c2d
2023-11-03 22:49:15 +01:00
Ricardo Wurmus 2d821734f0
gnu: r-interactivedisplay: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-interactivedisplay): Update to 1.40.0.
[propagated-inputs]: Remove r-biocmanager, r-dt, and r-zlibbioc.

Change-Id: Id99c933e595dc0291fb3570cd3c8e894e2b1ed26
2023-11-03 22:49:15 +01:00
Ricardo Wurmus b535785eff
gnu: r-impute: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-impute): Update to 1.76.0.

Change-Id: Idd60ab4f9888c957d1d6e4423a18d0b3b3305521
2023-11-03 22:49:15 +01:00
Ricardo Wurmus 3c8f3921f0
gnu: r-rhtslib: Update to 2.4.0.
* gnu/packages/bioconductor.scm (r-rhtslib): Update to 2.4.0.

Change-Id: I4d3d80435b6125c8111a925fbd3bf36a22f588d0
2023-11-03 22:49:15 +01:00
Ricardo Wurmus e28ffb7341
gnu: r-rdisop: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-rdisop): Update to 1.62.0.

Change-Id: I9a43730743b2c5272c811a560c92cac9dddef1c8
2023-11-03 22:49:15 +01:00
Ricardo Wurmus f246bfb448
gnu: r-raggedexperiment: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-raggedexperiment): Update to 1.26.0.
[propagated-inputs]: Add r-biocbaseutils.

Change-Id: I44e267380de6286edd61f896bd688753c9fc9ea9
2023-11-03 22:49:15 +01:00
Ricardo Wurmus c333878ff5
gnu: r-radiogx: Update to 2.6.0.
* gnu/packages/bioconductor.scm (r-radiogx): Update to 2.6.0.

Change-Id: I8f2ef5c78fd749487ebb104b2fc11f6406cbf8cc
2023-11-03 22:49:15 +01:00
Ricardo Wurmus 8fab582215
gnu: r-r4rna: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-r4rna): Update to 1.30.0.

Change-Id: I4a43b9df3f658c6eb34563e6d841f8c9b22a9fb5
2023-11-03 22:49:15 +01:00
Ricardo Wurmus d3281df551
gnu: r-r3cseq: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-r3cseq): Update to 1.48.0.

Change-Id: Ifa2805c0d0c76ebcdf0927923b9cb6f44cf9c981
2023-11-03 22:49:15 +01:00
Ricardo Wurmus 4e5c14aae2
gnu: r-hpar: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.44.0.

Change-Id: Ie79908c8907b69b3ad537b23ff084025d5a76f14
2023-11-03 22:49:15 +01:00
Ricardo Wurmus 7b39b6c668
gnu: r-harshlight: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-harshlight): Update to 1.74.0.

Change-Id: Iceae81998c0eeccb8028c513eca46e70b388c985
2023-11-03 22:49:15 +01:00
Ricardo Wurmus 135ebdd145
gnu: r-gsva: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-gsva): Update to 1.50.0.

Change-Id: Ib9bcb30aa669ff9d3445d38e22b656a8b43c2bb7
2023-11-03 22:49:15 +01:00
Ricardo Wurmus cef824b9f4
gnu: r-gseabase: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-gseabase): Update to 1.64.0.

Change-Id: I549083d0614b465d099c8ddfcccfca9e71a0a12b
2023-11-03 22:49:15 +01:00