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Author SHA1 Message Date
Mathieu Othacehe 575032c80a
gnu: guile-parted: Update to 0.0.4. 
* gnu/packages/guile-xyz.scm (guile-parted): Update to 0.0.4.
 2020-04-15 08:56:20 +02:00
Leo Famulari 004033a9cf
gnu: cgit: Update Git source code to 2.25.3. 
* gnu/packages/version-control.scm (cgit)[inputs]: Update git-source to 2.25.3.
 2020-04-15 01:54:50 -04:00
Leo Famulari 3f717354d4
gnu: Git: Update to 2.26.1 [fixes CVE-2020-5260]. 
* gnu/packages/version-control.scm (git): Update to 2.26.1.
[native-inputs]: Update git-manpages.
 2020-04-15 01:54:49 -04:00
Ludovic Courtès d62c9b2671
Update NEWS. 2020-04-15 00:02:23 +02:00
Ludovic Courtès 8aa752ba22
services: shepherd: Increase the PID file timeout to 30s. 
When running the installation image off a DVD, early I/O operations are
extremely slow, to the point that something like dbus-daemon would need
~20s to start.  This change works around the issue.

Fixes <https://bugs.gnu.org/40572>.
Reported by Florian Pelz <pelzflorian@pelzflorian.de>.

* gnu/services/shepherd.scm (shepherd-configuration-file): Set
%pid-file-timeout to 30.
 2020-04-15 00:02:23 +02:00
Michael Rohleder 06e48de57e
gnu: emacs-helm-ag: Update to 0.59. 
* gnu/packages/emacs-xyz.scm (emacs-helm-ag): Update to 0.59.
 2020-04-14 22:54:34 +02:00
Marius Bakke 2e3d5fdf05
gnu: cook: Fix test failure. 
* gnu/packages/cook.scm (cook)[arguments]: Override LC_ALL for one test.
 2020-04-14 22:48:52 +02:00
Marius Bakke 671dba6566
gnu: python-pyrsistent: Update to 0.16.0. 
* gnu/packages/python-xyz.scm (python-pyrsistent): Update to 0.16.0.
 2020-04-14 22:48:51 +02:00
Marius Bakke 83031dee87
gnu: python-gssapi: Update to 1.6.5. 
* gnu/packages/python-xyz.scm (python-gssapi): Update to 1.6.5.
 2020-04-14 22:48:51 +02:00
Marius Bakke c0b6bb23c1
gnu: python-parso: Update to 0.7.0. 
* gnu/packages/python-xyz.scm (python-parso): Update to 0.7.0.
 2020-04-14 22:48:51 +02:00
Tobias Geerinckx-Rice a4dd5955b3
gnu: mksh: Update to 58. 
* gnu/packages/shells.scm (mksh): Update to 58.
 2020-04-14 20:23:22 +02:00
Tobias Geerinckx-Rice eaa668ddda
gnu: txr: Update to 235. 
* gnu/packages/lisp.scm (txr): Update to 235.
[arguments]: Cosmetic shortening.
 2020-04-14 20:23:22 +02:00
Tobias Geerinckx-Rice 92e52d25ad
gnu: txr: Call ./configure manually instead of patching. 
* gnu/packages/lisp.scm (txr)[source]: Remove patch.
[arguments]: Add ‘--prefix’ to #:configure-flags.
Use a custom ‘configure’ phase.
* gnu/packages/patches/txr-shell.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2020-04-14 20:23:21 +02:00
Tobias Geerinckx-Rice c3f88d4f34
gnu: txr: Declare test target. 
* gnu/packages/lisp.scm (txr)[arguments]: Use #:test-target instead of
a trivial custom ‘check’ phase.
 2020-04-14 20:23:21 +02:00
Tobias Geerinckx-Rice 8aa0d29d3e
gnu: i2pd: Update to 2.31.0. 
* gnu/packages/i2p.scm (i2pd): Update to 2.31.0.
 2020-04-14 20:23:21 +02:00
Tobias Geerinckx-Rice d9b9989a5b
gnu: strongswan: Update to 5.8.4. 
* gnu/packages/networking.scm (strongswan): Update to 5.8.4.
 2020-04-14 20:23:21 +02:00
Brice Waegeneire 1373cb4080
doc: Fix typo. 
* doc/guix.texi (Web Services)[nginx-php-fpm-location]: Replace
'nginx-php-fpm-location' by 'nginx-php-location'.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2020-04-14 19:21:12 +01:00
Tobias Geerinckx-Rice d94271f9ca
gnu: python-podcastparser: Update to 0.6.5. 
* gnu/packages/gpodder.scm (python-podcastparser): Update to 0.6.5.
 2020-04-14 17:33:12 +02:00
Tobias Geerinckx-Rice 49f8912bca
gnu: man-pages: Update to 5.06. 
* gnu/packages/man.scm (man-pages): Update to 5.06.
 2020-04-14 17:33:11 +02:00
Tobias Geerinckx-Rice 0fc1feec2e
gnu: x265: Update to 3.3. 
* gnu/packages/video.scm (x265): Update to 3.3.
 2020-04-14 17:33:11 +02:00
Ricardo Wurmus 9536367ca0
gnu: r-glue: Update to 1.4.0. 
* gnu/packages/cran.scm (r-glue): Update to 1.4.0.
[native-inputs]: Add commment explaining why r-knitr is not an input.
 2020-04-14 16:41:01 +02:00
Ricardo Wurmus 3707efe4e1
gnu: r-rcpparmadillo: Update to 0.9.860.2.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.860.2.0.
[native-inputs]: Remove r-knitr, r-rmarkdown, ghc-pandoc, and
ghc-pandoc-citeproc.
 2020-04-14 16:41:01 +02:00
Ricardo Wurmus 9a6bc4c214
gnu: r-atacseqqc: Update to 1.10.4. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.4.
 2020-04-14 16:41:01 +02:00
Ricardo Wurmus f4be4995d6
gnu: r-a4base: Update to 1.34.1. 
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.34.1.
 2020-04-14 16:41:01 +02:00
Ricardo Wurmus 851081bf34
gnu: r-varianttools: Update to 1.28.1. 
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.28.1.
 2020-04-14 16:41:01 +02:00
Ricardo Wurmus 64cf2ff90e
gnu: r-genomicinteractions: Update to 1.20.3. 
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.20.3.
 2020-04-14 16:41:00 +02:00
Ricardo Wurmus 1971d11db9
gnu: r-delayedarray: Update to 0.12.3. 
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.12.3.
[native-inputs]: Add r-knitr.
 2020-04-14 16:41:00 +02:00
Ricardo Wurmus 679609e179
gnu: r-s4vectors: Update to 0.24.4. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.24.4.
 2020-04-14 16:41:00 +02:00
Ricardo Wurmus 79759bc427
gnu: r-httpcode: Update to 0.3.0. 
* gnu/packages/cran.scm (r-httpcode): Update to 0.3.0.
 2020-04-14 16:41:00 +02:00
Ricardo Wurmus e9962d8a6b
gnu: r-isoband: Update to 0.2.1. 
* gnu/packages/cran.scm (r-isoband): Update to 0.2.1.
[native-inputs]: Add r-knitr.
 2020-04-14 16:41:00 +02:00
Ricardo Wurmus 5c819cd214
gnu: r-anthropometry: Update to 1.14. 
* gnu/packages/cran.scm (r-anthropometry): Update to 1.14.
[native-inputs]: Add r-knitr.
 2020-04-14 16:41:00 +02:00
Ricardo Wurmus 172fea2c0a
gnu: r-lhs: Update to 1.0.2. 
* gnu/packages/cran.scm (r-lhs): Update to 1.0.2.
[native-inputs]: Add r-knitr.
 2020-04-14 16:41:00 +02:00
Ricardo Wurmus cee6e12acf
gnu: r-txtplot: Update to 1.0-4. 
* gnu/packages/cran.scm (r-txtplot): Update to 1.0-4.
 2020-04-14 16:41:00 +02:00
Ricardo Wurmus 72db4e234d
gnu: r-parameters: Update to 0.6.1. 
* gnu/packages/cran.scm (r-parameters): Update to 0.6.1.
 2020-04-14 16:41:00 +02:00
Ricardo Wurmus 2274df5ae7
gnu: r-sf: Update to 0.9-1. 
* gnu/packages/cran.scm (r-sf): Update to 0.9-1.
 2020-04-14 16:41:00 +02:00
Ricardo Wurmus e515dd6068
gnu: r-spdata: Update to 0.3.5. 
* gnu/packages/cran.scm (r-spdata): Update to 0.3.5.
 2020-04-14 16:41:00 +02:00
Ricardo Wurmus b05caf7080
gnu: r-classint: Update to 0.4-3. 
* gnu/packages/cran.scm (r-classint): Update to 0.4-3.
[native-inputs]: Add r-knitr.
 2020-04-14 16:41:00 +02:00
Ricardo Wurmus 43594ac04a
gnu: r-lemon: Update to 0.4.4. 
* gnu/packages/cran.scm (r-lemon): Update to 0.4.4.
[propagated-inputs]: Add r-rlang.
 2020-04-14 16:40:59 +02:00
Ricardo Wurmus e1e73f6b0e
gnu: r-compositions: Update to 1.40-5. 
* gnu/packages/cran.scm (r-compositions): Update to 1.40-5.
 2020-04-14 16:40:59 +02:00
Ricardo Wurmus 96cda4517d
gnu: r-lmertest: Update to 3.1-2. 
* gnu/packages/cran.scm (r-lmertest): Update to 3.1-2.
 2020-04-14 16:40:59 +02:00
Ricardo Wurmus 708ef6247f
gnu: r-usethis: Update to 1.6.0. 
* gnu/packages/cran.scm (r-usethis): Update to 1.6.0.
[propagated-inputs]: Remove r-clisymbols; add r-cli and r-rematch2.
 2020-04-14 16:40:59 +02:00
Ricardo Wurmus 10ce5ca824
gnu: r-fs: Update to 1.4.1. 
* gnu/packages/cran.scm (r-fs): Update to 1.4.1.
 2020-04-14 16:40:59 +02:00
Ricardo Wurmus dceb9a702b
gnu: r-effectsize: Update to 0.3.0. 
* gnu/packages/cran.scm (r-effectsize): Update to 0.3.0.
[native-inputs]: Add r-knitr.
 2020-04-14 16:40:59 +02:00
Ricardo Wurmus 50df1d7b37
gnu: r-multcomp: Update to 1.4-13. 
* gnu/packages/cran.scm (r-multcomp): Update to 1.4-13.
 2020-04-14 16:40:59 +02:00
Ricardo Wurmus 4bfa2b2536
gnu: r-survey: Update to 4.0. 
* gnu/packages/cran.scm (r-survey): Update to 4.0.
 2020-04-14 16:40:59 +02:00
Ricardo Wurmus 7ab2b36ffb
gnu: r-sjmisc: Update to 2.8.4. 
* gnu/packages/cran.scm (r-sjmisc): Update to 2.8.4.
[native-inputs]: Add r-knitr.
 2020-04-14 16:40:59 +02:00
Ricardo Wurmus 3552a8dfe4
gnu: r-arules: Update to 1.6-5. 
* gnu/packages/cran.scm (r-arules): Update to 1.6-5.
 2020-04-14 16:40:59 +02:00
Ricardo Wurmus 3343ec5262
gnu: r-xfun: Update to 0.13. 
* gnu/packages/cran.scm (r-xfun): Update to 0.13.
[native-inputs]: Add comment about not adding r-knitr.
 2020-04-14 16:40:59 +02:00
Ricardo Wurmus f14664aa5f
gnu: r-rcpp: Update to 1.0.4.6. 
* gnu/packages/cran.scm (r-rcpp): Update to 1.0.4.6.
 2020-04-14 16:40:59 +02:00
Ricardo Wurmus 2e47488c72
gnu: r-lubridate: Update to 1.7.8. 
* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.8.
[propagated-inputs]: Remove r-stringr; add r-generics.
[native-inputs]: Add r-knitr.
 2020-04-14 16:40:59 +02:00