* gnu/packages/bioinformatics.scm (vcflib)[source]: Add patch. Add
snippet to adjust files for new locations.
[inputs]: Add fastahack, smithwaterman, tabixpp, xz.
[native-inputs]: Add pkg-config. Remove the package-source of fastahack,
fsom, smithwaterman, tabixpp.
[arguments]: Remove make-flags. Add custom phase to add the output lib
directory to the rpath. Adjust custom 'unpack-submodule-sources for the
change in native-inputs. Adjust custom 'install phase to also install
libraries and headers.
* gnu/packages/patches/vcflib-use-shared-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
Includes fixes for CVE-2020-1436, CVE-2020-14345, CVE-2020-14346,
and CVE-2020-14361.
* gnu/packages/xorg.scm (xorg-server/fixed): Update to 1.20.9.
* gnu/packages/patches/xorg-server-CVE-2020-14347.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/patches/libmhash-hmac-fix-uaf.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mcrypt.scm (libmhash)[source]: Use it.
* gnu/packages/video.scm (transcode): New variable.
* gnu/packages/patches/transcode-ffmpeg.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu/packages/language.scm (liblouisutdml): New variable.
* gnu/packages/patches/liblouisutdml-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu/packages/dns.scm (ldns): New variable.
* gnu/packages/patches/ldns-drill-examples.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu/packages/gnome.scm (seed): New variable.
* gnu/packages/patches/seed-webkit.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu/packages/gnome.scm (dee): New variable.
* gnu/packages/patches/dee-vapi.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu/packages/audio.scm (opensles): New variable.
* gnu/packages/patches/opensles-add-license-file.patch: New file.
* gnu/local.mk (opensles-add-license-file.patch): New reference.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu/packages/video.scm (libquicktime): New variable.
* gnu/packages/patches/libquicktime-ffmpeg.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
Fixes <https://issues.guix.gnu.org/41174> and <https://issues.guix.gnu.org/42618>.
The webkitgtk library relied on by Epiphany and others uses bubblewrap to
sandbox its process. This sandbox was only exposing fonts relative to
XDG_DATA_HOME. Extend it so that it honors font locations specified via
XDG_DATA_DIRS as well, which is what Guix uses.
* gnu/packages/patches/webkitgtk-bind-all-fonts.patch: Add patch.
* gnu/local.mk: Register it.
* gnu/packages/webkit.scm (webkitgtk)[source]<patches>: Use it.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
* gnu/packages/file-systems.scm (dbxfs): New variable.
* gnu/packages/patches/dbxfs-remove-sentry-sdk.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/patches/pjproject-correct-the-cflags-field.patch: Add patch.
* gnu/packages/patches/pjproject-fix-pkg-config-ldflags.patch: Likewise.
* gnu/local.mk (dist_patch_DATA): Register the new patches.
* gnu/packages/telephony.scm (pjproject): Use them.
* gnu/packages/jami.scm (pjproject-jami): Remove a patch from
pjproject-jami that is already applied against pjproject.
As of libx11 version 1.6.10, xim may be NULL, which causes a segmentation
fault in the execution of ARRAYELTS. As a cautionary measure, we
short-circuit this logic.
* gnu/packages/patches/emacs-ignore-empty-xim-styles.patch: New file.
* gnu/packages/emacs.scm (emacs emacs-next)[patches]: Use it.
* gnu/local.mk: Register it.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
* gnu/packages/patches/xorg-server-CVE-2020-14347.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (xorg-server/fixed): New variable.
(xorg-server)[replacement]: New field.
(xorg-server-wayland): Use package/inherit.
Restore blender@2.79b, the last version that does not require OpenGL 3,
and therefore the last version to work on many older computers. Note
that this commit relies on blender-2.79-newer-ffmpeg.patch and
blender-2.79-python-3.7-fix.patch, which were left in the tree when
blender@2.79b was previously removed in commit
1f14453eed.
* gnu/packages/patches/blender-2.79-gcc8.patch,
gnu/packages/patches/blender-2.79-gcc9.patch,
gnu/packages/patches/blender-2.79-oiio2.patch,
gnu/packages/patches/blender-2.79-python-3.8-fix.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/graphics.scm (blender-2.79): New variable.
* gnu/packages/nfs.scm (nfs4-acl-tools): New variable.
* gnu/packages/patches/nfs4-acl-tools-0.3.7-fixpaths.patch: New file.
* gnu/local.mk: Add it.
Signed-off-by: Marius Bakke <marius@gnu.org>
Fixes <https://bugs.gnu.org/42476>.
Reported by linka on #guix.
* gnu/packages/patches/qtbase-fix-krita-deadlock.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/qt.scm (qtbase-for-krita): New variable.
* gnu/packages/kde.scm (krita)[inputs]: Replace qtbase with qtbase-for-krita.
Fixes <https://bugs.gnu.org/42476>.
Reported by linka on #guix.
* gnu/packages/patches/qtbase-fix-krita-deadlock.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/kde.scm (qtbase-for-krita): New variable.
(krita)[inputs]: Replace qtbase with qtbase-for-krita.
* gnu/packages/assembly.scm (intel-xed): New variable.
* gnu/packages/patches/intel-xed-fix-nondeterminism.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add reference to new patch.
Signed-off-by: Marius Bakke <marius@gnu.org>