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Author SHA1 Message Date
Ricardo Wurmus 4f2112add9
gnu: r-a4core: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.36.0.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus d200b4dc48
gnu: r-annaffy: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.60.0.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus 500f7df840
gnu: r-mlinterfaces: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.68.0.
[propagated-inputs]: Add r-rcpp.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus 63c8323ae9
gnu: r-clusterprofiler: Update to 3.16.0. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.16.0.
[propagated-inputs]: Remove r-ggplot2; add r-downloader and r-dplyr.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus 43fb14cedc
gnu: r-enrichplot: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.8.1.
[propagated-inputs]: Add r-plyr and r-scatterpie.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus 3a80f1cfae
gnu: r-dose: Update to 3.14.0. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.14.0.
[propagated-inputs]: Remove r-s4vectors.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus 1dec455cb8
gnu: r-fgsea: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.14.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus b1d76ad0ca
gnu: r-sigpathway: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.56.0.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus 8d30d59adf
gnu: r-anota: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-anota): Update to 1.36.0.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus 621cd90406
gnu: r-gosemsim: Update to 2.14.0. 
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.14.0.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus 65e0a7b181
gnu: r-heatplus: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-heatplus): Update to 2.34.0.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus f2b686f61a
gnu: r-varianttools: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.30.0.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus ecb4e16519
gnu: r-triform: Update to 1.29.0. 
* gnu/packages/bioconductor.scm (r-triform): Update to 1.29.0.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus 293fb8a147
gnu: r-ioniser: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.12.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus 1465873c6c
gnu: r-linnorm: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.12.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus ae1c51a1c1
gnu: r-lumi: Update to 2.40.0. 
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.40.0.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus 5f25d5f80d
gnu: r-methylumi: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.34.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:52 +02:00
Ricardo Wurmus 83e6ffdac1
gnu: r-minfi: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.34.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus e3fbcb28a4
gnu: r-bumphunter: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.30.0.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus debaa0f3ba
gnu: r-siggenes: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.62.0.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus d784a4784f
gnu: r-illuminaio: Update to 0.30.0. 
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.30.0.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus 159e427c9f
gnu: r-geoquery: Update to 2.56.0. 
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.56.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus 3fc1e03949
gnu: r-scone: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-scone): Update to 1.12.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus ce9e19bc9b
gnu: r-scdd: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.12.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus 22c084ba9d
gnu: r-noiseq: Update to 2.31.0. 
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.31.0.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus d1f3c37134
gnu: r-monocle: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.16.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus 97cba97aa1
gnu: r-mast: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-mast): Update to 1.14.0.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus ee1e8fee89
gnu: r-icobra: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.16.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus 359a084aa3
gnu: r-ihw: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.16.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus 0653b8b082
gnu: r-lpsymphony: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.16.0.
[inputs]: Remove gfortran.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:51 +02:00
Ricardo Wurmus 6e2dc9e385
gnu: r-karyoploter: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.14.0.
[propagated-inputs]: Add r-genomicfeatures.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus 1e37caca52
gnu: r-ebseq: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.28.0.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus 6a7cfd5f1f
gnu: r-dnacopy: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.62.0.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus 866939b76d
gnu: r-copynumber: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-copynumber): Update to 1.28.0.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus 9697afb10e
gnu: r-chipexoqual: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.12.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus 784d1670b7
gnu: r-savr: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-savr): Update to 1.26.0.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus 265b645075
gnu: r-destiny: Update to 3.2.0. 
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.2.0.
[propagated-inputs]: Add r-nbconvertr.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus a8351d467c
gnu: r-biocsingular: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.4.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus f5864c11a4
gnu: r-biocneighbors: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.6.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus ae0fcaa6fd
gnu: r-ruvseq: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.22.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus 14f40ae830
gnu: r-dnabarcodes: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.18.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus 437bc4dda9
gnu: r-inspect: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.18.0.
[propagated-inputs]: Add r-rtracklayer.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus 46a973bc24
gnu: r-plgem: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.60.0.
 2020-06-13 01:19:50 +02:00
Ricardo Wurmus ee73dea61b
gnu: r-rots: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-rots): Update to 1.16.0.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus a6251d6e8b
gnu: r-glimma: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-glimma): Update to 1.16.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus 7fbd97745b
gnu: r-goseq: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.40.0.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus c7be592fb4
gnu: r-ctc: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.62.0.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus 76dd036e16
gnu: r-genomicinteractions: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.22.0.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus 861a903f14
gnu: r-interactionset: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.16.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus 6b78a91b75
gnu: r-riboseqr: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.22.0.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus 7aae05a953
gnu: r-riboprofiling: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.18.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus ef1d3231c3
gnu: r-chipcomp: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.18.0.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus 9834c36724
gnu: r-bayseq: Update to 2.22.0. 
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.22.0.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus f4ef564595
gnu: r-qdnaseq: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.24.0.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus de4a352e8a
gnu: r-cghcall: Update to 2.50.0. 
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.50.0.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus bd93ec4cf0
gnu: r-cghbase: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.48.0.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus 49d589e530
gnu: r-marray: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-marray): Update to 1.66.0.
 2020-06-13 01:19:49 +02:00
Ricardo Wurmus dc24de46ad
gnu: r-chippeakanno: Update to 3.22.2. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.22.2.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:48 +02:00
Ricardo Wurmus 7d37c6d914
gnu: r-graph: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-graph): Update to 1.66.0.
 2020-06-13 01:19:48 +02:00
Ricardo Wurmus 8cadf253c3
gnu: r-multtest: Update to 2.44.0. 
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.44.0.
 2020-06-13 01:19:48 +02:00
Ricardo Wurmus b47b649ae5
gnu: r-diffbind: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.16.0.
 2020-06-13 01:19:48 +02:00
Ricardo Wurmus f9a247590e
gnu: r-qvalue: Update to 2.20.0. 
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.20.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:48 +02:00
Ricardo Wurmus ace82f805f
gnu: r-oligo: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.52.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:48 +02:00
Ricardo Wurmus b628842f7e
gnu: r-oligoclasses: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.50.0.
 2020-06-13 01:19:48 +02:00
Ricardo Wurmus 53e4201937
gnu: r-geneplotter: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.66.0.
 2020-06-13 01:19:48 +02:00
Ricardo Wurmus 7f94cf0184
gnu: r-reportingtools: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.28.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:48 +02:00
Ricardo Wurmus 7f34dd58e9
gnu: r-regioner: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.20.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:48 +02:00
Ricardo Wurmus 07bea01092
gnu: r-hpar: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.30.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:48 +02:00
Ricardo Wurmus c2f4ad96f5
gnu: r-annotate: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.66.0.
 2020-06-13 01:19:48 +02:00
Ricardo Wurmus acaf8a2342
gnu: r-affxparser: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.60.0.
 2020-06-13 01:19:47 +02:00
Ricardo Wurmus fa61069781
gnu: r-affycoretools: Update to 1.60.1. 
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.60.1.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:47 +02:00
Ricardo Wurmus 36d4ca410d
gnu: r-affycontam: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.46.0.
 2020-06-13 01:19:47 +02:00
Ricardo Wurmus 251c18f1ed
gnu: r-affycompatible: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.48.0.
 2020-06-13 01:19:47 +02:00
Ricardo Wurmus 66aeb1b46d
gnu: r-affycomp: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.64.0.
 2020-06-13 01:19:47 +02:00
Ricardo Wurmus 2e15c16f1e
gnu: r-biocgenerics: Update to 0.34.0. 
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.34.0.
 2020-06-13 01:19:47 +02:00
Ricardo Wurmus bc217e4c0c
gnu: r-biocversion: Update to 3.11.1. 
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.11.1.
 2020-06-13 01:19:47 +02:00
Ricardo Wurmus 1ab0380db9
gnu: r-cummerbund: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.30.0.
 2020-06-13 01:19:47 +02:00
Ricardo Wurmus 751fa8ff71
gnu: r-coverageview: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.26.0.
 2020-06-13 01:19:47 +02:00
Ricardo Wurmus 725eea00da
gnu: r-ideoviz: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.24.0.
 2020-06-13 01:19:47 +02:00
Ricardo Wurmus a3b55161c7
gnu: r-delayedmatrixstats: Update to 1.10.0. 
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.10.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:47 +02:00
Ricardo Wurmus 47c7670c43
gnu: r-scran: Update to 1.16.0. 
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.16.0.
[propagated-inputs]: Add r-iranges.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:47 +02:00
Ricardo Wurmus 7039b53945
gnu: r-scater: Update to 1.16.1. 
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.16.1.
[propagated-inputs]: Add r-rlang.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:46 +02:00
Ricardo Wurmus 9e7acf2f14
gnu: r-singlecellexperiment: Update to 1.10.1. 
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.10.1.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:46 +02:00
Ricardo Wurmus 16dd6bacaa
gnu: r-beachmat: Update to 2.4.0. 
* gnu/packages/bioinformatics.scm (r-beachmat): Update to 2.4.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:46 +02:00
Ricardo Wurmus 87d5444d9f
gnu: r-rhdf5lib: Update to 1.10.0. 
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.10.0.
[source]: Update snippet.
[arguments]: Replace ZLIB variables in Makevars.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:46 +02:00
Ricardo Wurmus cf907680e8
gnu: r-hdf5array: Update to 1.16.0. 
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.16.0.
 2020-06-13 01:19:46 +02:00
Ricardo Wurmus 46f188d1df
gnu: r-hitc: Update to 1.32.0. 
* gnu/packages/bioinformatics.scm (r-hitc): Update to 1.32.0.
 2020-06-13 01:19:46 +02:00
Ricardo Wurmus 6be25cc2db
gnu: r-fithic: Update to 1.14.0. 
* gnu/packages/bioinformatics.scm (r-fithic): Update to 1.14.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:46 +02:00
Ricardo Wurmus a811751f49
gnu: r-sushi: Update to 1.26.0. 
* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.26.0.
 2020-06-13 01:19:46 +02:00
Ricardo Wurmus ddef43a29d
gnu: r-gwascat: Update to 2.20.1. 
* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.20.1.
[propagated-inputs]: Remove r-homo-sapiens; add r-ggplot2.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:46 +02:00
Ricardo Wurmus 522da60b29
gnu: r-gviz: Update to 1.32.0. 
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.32.0.
[propagated-inputs]: Add r-ensembldb.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:46 +02:00
Ricardo Wurmus a97897bc3d
gnu: r-gqtlstats: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.20.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:46 +02:00
Ricardo Wurmus 6caad43c18
gnu: r-ldblock: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.18.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:46 +02:00
Ricardo Wurmus 87772ab4dd
gnu: r-erma: Update to 1.4.0. 
* gnu/packages/bioinformatics.scm (r-erma): Update to 1.4.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:45 +02:00
Ricardo Wurmus aab0e28fc1
gnu: r-snpstats: Update to 1.38.0. 
* gnu/packages/bioinformatics.scm (r-snpstats): Update to 1.38.0.
 2020-06-13 01:19:45 +02:00
Ricardo Wurmus 42d8cd9f97
gnu: r-gqtlbase: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.20.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:45 +02:00
Ricardo Wurmus 7038aeb210
gnu: r-ggbio: Update to 1.36.0. 
* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.36.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:45 +02:00
Ricardo Wurmus 07518c3a34
gnu: r-biovizbase: Update to 1.36.0. 
* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.36.0.
 2020-06-13 01:19:45 +02:00
Ricardo Wurmus 7c26687871
gnu: r-organismdbi: Update to 1.30.0. 
* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.30.0.
 2020-06-13 01:19:45 +02:00
Ricardo Wurmus 39da6fbc40
gnu: r-ensembldb: Update to 2.12.1. 
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.12.1.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:45 +02:00
Ricardo Wurmus 7a9e7e4844
gnu: r-dirichletmultinomial: Update to 1.30.0. 
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.30.0.
 2020-06-13 01:19:45 +02:00
Ricardo Wurmus ca5c92c0c7
gnu: r-complexheatmap: Update to 2.4.2. 
* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 2.4.2.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:45 +02:00
Ricardo Wurmus 8323ff3376
gnu: r-genomicfiles: Update to 1.24.0. 
* gnu/packages/bioinformatics.scm (r-genomicfiles): Update to 1.24.0.
 2020-06-13 01:19:45 +02:00
Ricardo Wurmus 817e4c8b68
gnu: r-gage: Update to 2.37.0. 
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.37.0.
 2020-06-13 01:19:45 +02:00
Ricardo Wurmus d80a6cacaf
gnu: r-keggrest: Update to 1.28.0. 
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.28.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:45 +02:00
Ricardo Wurmus 3422533bd9
gnu: r-fastseg: Update to 1.34.0. 
* gnu/packages/bioinformatics.scm (r-fastseg): Update to 1.34.0.
 2020-06-13 01:19:44 +02:00
Ricardo Wurmus 5fce232977
gnu: r-annotationhub: Update to 2.20.0. 
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.20.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:44 +02:00
Ricardo Wurmus 334e8d7b79
gnu: r-interactivedisplaybase: Update to 1.26.3. 
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Update to
1.26.3.
[propagated-inputs]: Add r-dt.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:44 +02:00
Ricardo Wurmus 15990617eb
gnu: r-edaseq: Update to 2.22.0. 
* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.22.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:44 +02:00
Ricardo Wurmus c9059a3b0e
gnu: r-deseq: Update to 1.39.0. 
* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.39.0.
 2020-06-13 01:19:44 +02:00
Ricardo Wurmus 019bc36732
gnu: r-aroma-light: Update to 3.18.0. 
* gnu/packages/bioinformatics.scm (r-aroma-light): Update to 3.18.0.
 2020-06-13 01:19:44 +02:00
Ricardo Wurmus f6ddf20891
gnu: r-msnid: Update to 1.22.0. 
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.22.0.
 2020-06-13 01:19:44 +02:00
Ricardo Wurmus 10a7ee2609
gnu: r-msnbase: Update to 2.14.2. 
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.14.2.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:44 +02:00
Ricardo Wurmus 7b4fc6ae0a
gnu: r-pcamethods: Update to 1.80.0. 
* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.80.0.
 2020-06-13 01:19:44 +02:00
Ricardo Wurmus 8eb579883d
gnu: r-mzid: Update to 1.26.0. 
* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.26.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:44 +02:00
Ricardo Wurmus 8e0d11d88b
gnu: r-vsn: Update to 3.56.0. 
* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.56.0.
 2020-06-13 01:19:44 +02:00
Ricardo Wurmus 736f6cfe66
gnu: r-affy: Update to 1.66.0. 
* gnu/packages/bioinformatics.scm (r-affy): Update to 1.66.0.
 2020-06-13 01:19:44 +02:00
Ricardo Wurmus d93af7d632
gnu: r-affyio: Update to 1.58.0. 
* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.58.0.
 2020-06-13 01:19:43 +02:00
Ricardo Wurmus 157eb89707
gnu: r-protgenerics: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.20.0.
 2020-06-13 01:19:43 +02:00
Ricardo Wurmus d95a1cb10e
gnu: r-sva: Update to 3.36.0. 
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.36.0.
[propagated-inputs]: Add r-edger.
 2020-06-13 01:19:43 +02:00
Ricardo Wurmus c336d54d5f
gnu: r-methylkit: Update to 1.14.2. 
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.14.2.
 2020-06-13 01:19:43 +02:00
Ricardo Wurmus 3475ad075b
gnu: r-copywriter: Update to 2.20.0. 
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.20.0.
 2020-06-13 01:19:43 +02:00
Ricardo Wurmus 6a25fb9b6c
gnu: r-chipseq: Update to 1.38.0. 
* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.38.0.
 2020-06-13 01:19:43 +02:00
Ricardo Wurmus 43dec928d2
gnu: r-annotationfilter: Update to 1.12.0. 
* gnu/packages/bioinformatics.scm (r-annotationfilter): Update to 1.12.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:43 +02:00
Ricardo Wurmus 05716c1b1c
gnu: r-rhdf5: Update to 2.32.0. 
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.32.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:43 +02:00
Ricardo Wurmus 876e05bfce
gnu: r-tximport: Update to 1.16.1. 
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.16.1.
 2020-06-13 01:19:43 +02:00
Ricardo Wurmus 40a4772f09
gnu: r-mutationalpatterns: Update to 2.0.0. 
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 2.0.0.
 2020-06-13 01:19:43 +02:00
Ricardo Wurmus 3c53617efc
gnu: r-rcas: Update to 1.14.0. 
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.14.0.
[propagated-inputs]: Remove r-annotationdbi, r-biomart, r-dbi, r-knitr,
r-motifrg, r-org-hs-eg-db, and r-topgo; add r-bsgenome, r-gprofiler2,
r-iranges, and r-ranger.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:43 +02:00
Ricardo Wurmus 261d931406
gnu: r-bamsignals: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.20.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:43 +02:00
Ricardo Wurmus 8f08457f05
gnu: r-rhtslib: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.20.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:42 +02:00
Ricardo Wurmus 52ce0d299d
gnu: r-zlibbioc: Update to 1.34.0. 
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.34.0.
 2020-06-13 01:19:42 +02:00
Ricardo Wurmus 239ca0f3bd
gnu: r-motifrg: Update to 1.31.0. 
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.31.0.
 2020-06-13 01:19:42 +02:00
Ricardo Wurmus 40ba4e8466
gnu: r-seqlogo: Update to 1.54.3. 
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.54.3.
 2020-06-13 01:19:42 +02:00
Ricardo Wurmus 837e7634d9
gnu: r-genomation: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.20.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:42 +02:00
Ricardo Wurmus 2d537b5afc
gnu: r-seqpattern: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.20.0.
 2020-06-13 01:19:42 +02:00
Ricardo Wurmus e6df69a84d
gnu: r-impute: Update to 1.62.0. 
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.62.0.
 2020-06-13 01:19:42 +02:00
Ricardo Wurmus d9b23ec47c
gnu: r-bsgenome: Update to 1.56.0. 
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.56.0.
[propagated-inputs]: Add r-matrixstats.
 2020-06-13 01:19:42 +02:00
Ricardo Wurmus 543fd63c2e
gnu: r-topgo: Update to 2.40.0. 
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.40.0.
 2020-06-13 01:19:42 +02:00
Ricardo Wurmus a285314e29
gnu: r-genomicfeatures: Update to 1.40.0. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.40.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:42 +02:00
Ricardo Wurmus f85794edb8
gnu: r-rtracklayer: Update to 1.48.0. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.48.0.
 2020-06-13 01:19:42 +02:00
Ricardo Wurmus 58613ca1e5
gnu: r-genomicalignments: Update to 1.24.0. 
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.24.0.
 2020-06-13 01:19:42 +02:00
Ricardo Wurmus 87c98cf701
gnu: r-summarizedexperiment: Update to 1.18.1. 
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.18.1.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:41 +02:00
Ricardo Wurmus 46e103a1b5
gnu: r-delayedarray: Update to 0.14.0. 
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.14.0.
[propagated-inputs]: Remove r-biocparallel.
 2020-06-13 01:19:41 +02:00
Ricardo Wurmus 1f9c87a442
gnu: r-rsamtools: Update to 2.4.0. 
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.4.0.
 2020-06-13 01:19:41 +02:00
Ricardo Wurmus d3491d4dad
gnu: r-biostrings: Update to 2.56.0. 
* gnu/packages/bioinformatics.scm ( r-biostrings): Update to 2.56.0.
[propagated-inputs]: Add r-crayon.
 2020-06-13 01:19:41 +02:00
Ricardo Wurmus cb486f16da
gnu: r-biocparallel: Update to 1.22.0. 
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.22.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:41 +02:00
Ricardo Wurmus e87e6cc89d
gnu: r-biomart: Update to 2.44.0. 
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.44.0.
 2020-06-13 01:19:41 +02:00
Ricardo Wurmus 920224771f
gnu: r-annotationdbi: Update to 1.50.0. 
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.50.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:41 +02:00
Ricardo Wurmus 7d91e3bed4
gnu: r-biobase: Update to 2.48.0. 
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.48.0.
 2020-06-13 01:19:41 +02:00
Ricardo Wurmus 087a97f8df
gnu: r-genomicranges: Update to 1.40.0. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.40.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:41 +02:00