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Author SHA1 Message Date
Ricardo Wurmus
99206a360f
gnu: r-energy: Update to 1.7-10. 
* gnu/packages/cran.scm (r-energy): Update to 1.7-10.
 2022-05-28 23:18:45 +02:00
Ricardo Wurmus
e5eec206ae
gnu: r-bbmle: Update to 1.0.25. 
* gnu/packages/cran.scm (r-bbmle): Update to 1.0.25.
 2022-05-28 23:18:45 +02:00
Ricardo Wurmus
3651780fc2
gnu: r-extremes: Update to 2.1-2. 
* gnu/packages/cran.scm (r-extremes): Update to 2.1-2.
 2022-05-28 23:18:45 +02:00
Ricardo Wurmus
69d208b4de
gnu: r-rmtstat: Update to 0.3.1. 
* gnu/packages/cran.scm (r-rmtstat): Update to 0.3.1.
 2022-05-28 23:18:45 +02:00
Ricardo Wurmus
8fa3e9f513
gnu: r-sp: Update to 1.4-7. 
* gnu/packages/cran.scm (r-sp): Update to 1.4-7.
 2022-05-28 23:18:45 +02:00
Ricardo Wurmus
9879432da2
gnu: r-restrserve: Update to 1.1.1. 
* gnu/packages/cran.scm (r-restrserve): Update to 1.1.1.
[propagated-inputs]: Add r-digest.
 2022-05-28 23:18:45 +02:00
Ricardo Wurmus
20cbdd3d2d
gnu: r-reshape: Update to 0.8.9. 
* gnu/packages/cran.scm (r-reshape): Update to 0.8.9.
[propagated-inputs]: Remove r-rcpp.
 2022-05-28 23:18:44 +02:00
Ricardo Wurmus
51bc637839
gnu: r-ff: Update to 4.0.7. 
* gnu/packages/cran.scm (r-ff): Update to 4.0.7.
 2022-05-28 23:18:44 +02:00
Ricardo Wurmus
c02dbd5c80
gnu: r-circlize: Update to 0.4.15. 
* gnu/packages/cran.scm (r-circlize): Update to 0.4.15.
 2022-05-28 23:18:44 +02:00
Ricardo Wurmus
9c33d6688d
gnu: r-rcppxptrutils: Update to 0.1.2. 
* gnu/packages/cran.scm (r-rcppxptrutils): Update to 0.1.2.
 2022-05-28 23:18:44 +02:00
Ricardo Wurmus
30fc048229
gnu: r-ps: Update to 1.7.0. 
* gnu/packages/cran.scm (r-ps): Update to 1.7.0.
 2022-05-28 23:18:44 +02:00
Ricardo Wurmus
3a389207b5
gnu: r-haven: Update to 2.5.0. 
* gnu/packages/cran.scm (r-haven): Update to 2.5.0.
[propagated-inputs]: Add r-cli and r-lifecycle.
 2022-05-28 23:18:44 +02:00
Ricardo Wurmus
dea8ee293e
gnu: r-shinyfiles: Update to 0.9.2. 
* gnu/packages/cran.scm (r-shinyfiles): Update to 0.9.2.
 2022-05-28 23:18:44 +02:00
Ricardo Wurmus
1baffaf491
gnu: r-rstpm2: Update to 1.5.6. 
* gnu/packages/cran.scm (r-rstpm2): Update to 1.5.6.
 2022-05-28 23:18:44 +02:00
Ricardo Wurmus
33756c6ed5
gnu: r-fastghquad: Update to 1.0.1. 
* gnu/packages/cran.scm (r-fastghquad): Update to 1.0.1.
 2022-05-28 23:18:44 +02:00
Ricardo Wurmus
20739d83a7
gnu: r-vegan: Update to 2.6-2. 
* gnu/packages/cran.scm (r-vegan): Update to 2.6-2.
 2022-05-28 23:18:43 +02:00
Ricardo Wurmus
5128750299
gnu: r-astsa: Update to 1.15. 
* gnu/packages/cran.scm (r-astsa): Update to 1.15.
 2022-05-28 23:18:43 +02:00
Ricardo Wurmus
d4241d5af6
gnu: r-shadowtext: Update to 0.1.2. 
* gnu/packages/cran.scm (r-shadowtext): Update to 0.1.2.
 2022-05-28 23:18:43 +02:00
Ricardo Wurmus
fd8062128b
gnu: r-mboost: Update to 2.9-7. 
* gnu/packages/cran.scm (r-mboost): Update to 2.9-7.
 2022-05-28 23:18:43 +02:00
Ricardo Wurmus
819d200a0b
gnu: r-polychrome: Update to 1.5.1. 
* gnu/packages/cran.scm (r-polychrome): Update to 1.5.1.
 2022-05-28 23:18:43 +02:00
Ricardo Wurmus
9d83753c40
gnu: r-scales: Update to 1.2.0. 
* gnu/packages/cran.scm (r-scales): Update to 1.2.0.
[propagated-inputs]: Add r-rlang.
 2022-05-28 23:18:43 +02:00
Ricardo Wurmus
fbac14dd28
gnu: r-zoo: Update to 1.8-10. 
* gnu/packages/cran.scm (r-zoo): Update to 1.8-10.
 2022-05-28 23:18:43 +02:00
Ricardo Wurmus
a075d93dfc
gnu: r-v8: Update to 4.2.0. 
* gnu/packages/cran.scm (r-v8): Update to 4.2.0.
 2022-05-28 23:18:43 +02:00
Ricardo Wurmus
d4e4cf21b8
gnu: r-datawizard: Update to 0.4.1. 
* gnu/packages/cran.scm (r-datawizard): Update to 0.4.1.
 2022-05-28 23:18:42 +02:00
Ricardo Wurmus
32a3b09c51
gnu: r-abn: Update to 2.7-1. 
* gnu/packages/bioconductor.scm (r-abn): Update to 2.7-1.
 2022-05-28 23:18:42 +02:00
Ricardo Wurmus
3360f14b08
gnu: r-ldheatmap: Update to 1.0-6. 
* gnu/packages/bioconductor.scm (r-ldheatmap): Update to 1.0-6.
 2022-05-28 23:18:42 +02:00
Ricardo Wurmus
3ceaa41e67
gnu: r-wgcna: Update to 1.71. 
* gnu/packages/bioconductor.scm (r-wgcna): Update to 1.71.
 2022-05-28 23:18:42 +02:00
Ricardo Wurmus
ac12a57b78
gnu: r-activepathways: Update to 1.1.0. 
* gnu/packages/bioconductor.scm (r-activepathways): Update to 1.1.0.
 2022-05-28 23:18:42 +02:00
Ricardo Wurmus
43e82253c1
gnu: r-with-tests: Update to 4.2.0. 
* gnu/packages/statistics.scm (r-with-tests): Update to 4.2.0.
[arguments]: Add phase 'patch-tests; add phase 'set-home.
 2022-05-28 23:18:42 +02:00
Efraim Flashner
0542905a2c
gnu: wget2: Reindent package. 
* gnu/packages/wget.scm (wget2): Reindent package with 'guix style'.
 2022-05-28 22:23:32 +03:00
Efraim Flashner
81803c5eaa
gnu: wget2: Update to 2.0.1. 
* gnu/packages/wget.scm (wget2): Update to 2.0.1.
[arguments]: Remove trailing #t from phases.
 2022-05-28 22:18:40 +03:00
Efraim Flashner
39227724e8
gnu: mesa: Build with llvm on armhf-linux. 
* gnu/packages/gl.scm (mesa)[inputs]: Add llvm for all architectures.
[native-inputs]: Add glslang for all architectures.
[arguments]: Adjust configure-flags to give armhf-linux its own
gallium-drivers and enable llvm support. Rewrite portions that no longer
depend on specific architectures to enable flags. Adjust custom
'disable-failing-test phase to skip a test on armhf-linux.
 2022-05-28 22:02:36 +03:00
Efraim Flashner
4a53069b38
gnu: clang-from-llvm: Fix build on some architectures. 
* gnu/packages/llvm.scm (clang-from-llvm)[arguments]: Adjust custom
'symlink-cfi_ignorelist phase to only symlink when the file exists.
 2022-05-28 22:02:35 +03:00
Liliana Marie Prikler
cc0401a9de
gnu: quodlibet: Fix inputs. 
* gnu/packages/music.scm (quodlibet)[inputs]: Add bash-minimal for
‘wrap-program’.  Remove extraneous gtk+.
 2022-05-28 17:28:39 +02:00
Remco van 't Veer
092ec158f7
gnu: Add quodlibet. 
* gnu/packages/music.scm (quodlibet): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-05-28 13:02:19 +02:00
Liliana Marie Prikler
2a97acbe3d
gnu: emacs-magit: Use directory excursions rather than wild chdir. 
* gnu/packages/emacs-xyz.scm (emacs-magit)[#:phases]
<build-info-manual, configure-git>: Don't chdir.
<set-magit-version, patch-exec-paths>: Use full file names.
<enter-lisp-directory>: Drop phase.
<expand-load-path, install>: Wrap in directory excursions.
 2022-05-28 08:49:41 +02:00
Zhu Zihao
9368341092
gnu: emacs-magit: Drop the libgit backend. 
The libgit backend currently provides next to no features, but
demands extra maintenance overhead.  It is in fact not a usable
backend; thus let's not use it.

* gnu/packages/emacs-xyz.scm (emacs-magit)[arguments]
<#:emacs>: Drop argument.
<#:exclude>: Add sources related to emacs-libgit.
[inputs]: Remove emacs-libgit.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-05-28 08:34:25 +02:00
Zhu Zihao
0bb6504ba6
gnu: emacs-magit: Use G-expressions. 
* gnu/packages/emacs-xyz.scm (emacs-magit)[arguments]: Use G-expressions.
<#:phases>: Use search-input-file to find perl for ‘patch-exec-paths’.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-05-28 08:34:25 +02:00
Vagrant Cascadian
83f444de56
gnu: diffoscope: Update to 214. 
* gnu/packages/diffoscope.scm (diffoscope): Update to 214.
  [arguments]: Remove 'xb-tool-external-tool phase.
 2022-05-27 15:16:16 -07:00
Wamm K. D
cfc6bcee4c
gnu: Add python-gatt. 
* gnu/packages/python-xyz.scm (python-gatt): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-28 00:02:56 +02:00
yarl-baudig@mailoo.org
d4158ea63a
substitute: Check for --help or --version options early. 
Running `guix archive --authorize` sets /etc/guix/acl to 600
via with-atomic-file-output via mkstemp!.
Then running `guix substitute --help/--version` fails on "permission denied".
While "guix substitute" is an internal tool, the options --help and --version
exist and you should be able to run those from the command line.

* guix/scripts/substitute.scm (guix-substitute): Earlier check for
--help or --version.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-27 23:36:36 +02:00
Pradana AUMARS
5bfb7ebe5d
gnu: Add python-srt. 
* gnu/packages/python-xyz (python-srt): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-27 23:34:29 +02:00
Artyom V. Poptsov
6caac30e44
gnu: Add python-wasabi. 
* gnu/packages/python-xyz.scm (python-wasabi): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-27 23:30:00 +02:00
jgart
eefff9fb74
gnu: emacs-evil-org: Update to 0d10ff7. 
* gnu/packages/emacs-xyz.scm (emacs-evil-org): Update to 0d10ff7.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-27 23:23:45 +02:00
Niklas Eklund
3a5540a12c
gnu: emacs-detached: Update to 0.7. 
* gnu/packages/emacs-xyz.scm (emacs-detached): Update to 0.7.
(emacs-dtache): Define as a deprecated alias.

I have both renamed the package dtache -> detached as well as moving the
development from gitlab to sourcehut. This patch reflects those changes, as
well as updating to the latest release of the package.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-27 23:19:13 +02:00
Artyom V. Poptsov
4f122abfe0
gnu: Add python-catalogue. 
* gnu/packages/python-xyz.scm (python-catalogue): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-27 23:13:24 +02:00
Benjamin Slade
5ae78c523a
gnu: yad: Update to 12.0. 
* gnu/packages/gtk.scm (yad): Update to 12.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-27 23:10:03 +02:00
Ludovic Courtès
36fde042af
gnu: python-peachpy: Update to 913d74c. 
Fixes <https://issues.guix.gnu.org/55669>.
Reported by Sebastian Gibb <mail@sebastiangibb.de>.

* gnu/packages/python-xyz.scm (python-peachpy): Update to 913d74c.
 2022-05-27 23:07:56 +02:00
Leo Famulari
6e9d99f97f
gnu: linux-libre 4.9: Update to 4.9.316. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.316.
(linux-libre-4.9-pristine-source): Update hash.
 2022-05-27 11:21:19 -04:00
Leo Famulari
be03c5e0aa
gnu: linux-libre 4.14: Update to 4.14.281. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.281.
(linux-libre-4.14-pristine-source): Update hash.
 2022-05-27 11:21:18 -04:00