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133002 Commits

Author SHA1 Message Date
Arun Isaac 65584b9ba8
gnu: python-schema-salad: Update to 8.5.20240102191335. 
* gnu/packages/bioinformatics.scm (python-schema-salad): Update to
8.5.20240102191335.
[native-inputs]: Add python-pytest-xdist.
[propagated-inputs]: Add python-importlib-resources and
python-mypy-extensions. Remove python-lockfile, python-rdflib-jsonld and
python-typing-extensions. Replace python-mistune with python-mistune-next.
[arguments]: Use G-expressions. Set exact version number. Skip more tests that
require network access.

Change-Id: I4de4704f58f40fdf9bf4c02e41c2c353beaa3eb2
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2024-02-22 13:02:42 +00:00
Arun Isaac e5ae409276
gnu: python-ruamel-yaml: Update to 0.18.6. 
* gnu/package/serialization.scm (python-ruamel-yaml): Update to 0.18.6.
(python-ruamel.yaml-0.16): New variable.
* gnu/packages/package-management.scm (conda)[inputs]: Replace
python-ruamel.yaml with python-ruamel.yaml-0.16.
* gnu/packages/backup.scm (borgmatic)[inputs]: Replace python-ruamel.yaml with
python-ruamel.yaml-0.16.
* gnu/packages/python-xyz.scm (dynaconf)[inputs]: Replace python-ruamel.yaml
with python-ruamel.yaml-0.16.

Change-Id: Iff9eeeae043c9547d93a6c780f0c30bd760490d9

Change-Id: I43cad7e3936f62d209fbba7e86b93519cfc1c1ba
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2024-02-22 13:02:42 +00:00
Arun Isaac 127db3f844
gnu: python-ruamel.yaml.clib: Update to 0.2.8. 
* gnu/packages/serialization.scm (python-ruamel.yaml.clib): Update to 0.2.8.

Change-Id: I18172bb4cad80b0e1a5db11fbc8fb937f46a1862
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2024-02-22 13:02:42 +00:00
Maxim Cournoyer dd28fe8b80
gnu: tigervnc-client: Update to 1.13.1. 
* gnu/packages/vnc.scm (tigervnc-client): Update to 1.13.1.
(tigervnc-server): Likewise.

Change-Id: I88157aabfe43bb7273d465fea4ef5bf31979d8e9
 2024-02-22 07:49:17 -05:00
Maxim Cournoyer 1559add530
gnu: emacs-tramp: Update to 2.6.2.1. 
* gnu/packages/emacs-xyz.scm (emacs-tramp): Update to 2.6.2.1.
[inputs]: Delete field.

Change-Id: I13a2f9c91dcfbd3152584fabd35597928ffe1de5
 2024-02-22 07:49:17 -05:00
Efraim Flashner 714d0c7202
gnu: Add neovim-dispatch. 
* gnu/packages/vim.scm (neovim-dispatch): New variable.

Change-Id: I458b0d390168170b47119c7f592042177f1402ae
 2024-02-22 11:57:38 +02:00
Efraim Flashner ad839564c8
gnu: vim-dispatch: Update to 1.8-1.4c695bc. 
* gnu/packages/vim.scm (vim-dispatch): Update to 1.8-1.4c695bc.

Change-Id: I70b53f048c365fda47ba8820392b1f94b6bcfedd
 2024-02-22 11:57:38 +02:00
Efraim Flashner 4cdf734804
gnu: Add neovim-asyncrun. 
* gnu/packages/vim.scm (neovim-asyncrun): New variable.

Change-Id: I8716ff4a1beeee3364973c12e0e6243a1b21afe6
 2024-02-22 11:57:38 +02:00
Efraim Flashner 4bd8b6b0cc
gnu: vim-asyncrun: Update to 2.12.4. 
* gnu/packages/vim.scm (vim-asyncrun): Update to 2.12.4.

Change-Id: I316eb22c71ac4e807b9fd4590c7819478e4f7260
 2024-02-22 11:57:38 +02:00
Efraim Flashner 90a3c50610
gnu: universal-ctags: Update to 6.1.20240218.0. 
* gnu/packages/code.scm (universal-ctags): Update to 6.1.20240218.0.

Change-Id: I3d4b19d0ba002d809cb5e659899965d3f62e8e1a
 2024-02-22 11:57:37 +02:00
Ricardo Wurmus d3b325daec
gnu: Remove duplicate module import. 
* gnu/packages/mail.scm: Remove extra import of (guix utils).

Change-Id: I757af2e1249e687aedb9774986304c6366c625a9
 2024-02-22 10:25:03 +01:00
Ricardo Wurmus e20ac6d869
gnu: Add libdbx. 
* gnu/packages/mail.scm (libdbx): New variable.

Change-Id: Ia50bec92c5de72e4037cbf59ee7ecc6bf657fdd0
 2024-02-22 10:24:57 +01:00
Ricardo Wurmus 8073a26022
gnu: Add emacs-mini-echo. 
* gnu/packages/emacs-xyz.scm (emacs-mini-echo): New variable.

Change-Id: Id5f293210755e7bb252b8e2a0ff71e9adb9cf95a
 2024-02-21 21:26:22 +01:00
Nicolas Graves f7c55f54b6
gnu: node-serialport-parser-inter-byte-timeout: Move in order. 
* gnu/packages/node-xyz.scm (node-serialport-parser-inter-byte-timeout): Move
package in alphabetical order.

Change-Id: Ice71f75c197b6d8f0e0c0c5b5bdb03ebf1d1d4cb
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-02-21 20:16:22 +00:00
Nicolas Graves a78a1fc3f0
gnu: node-serialport-parser-ready: Move in alphabetical order. 
* gnu/packages/node-xyz.scm (node-serialport-parser-ready): Move
package in alphabetical order.

Change-Id: I4d16d0ea922cfdd5fde4f055200645dee4110036
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-02-21 20:16:22 +00:00
Nicolas Graves 5b2f6a497f
gnu: node-serialport-parser-cctalk: Move in alphabetical order. 
* gnu/packages/node-xyz.scm (node-serialport-parser-cctalk): Move
package in alphabetical order.

Change-Id: Ia849d7f2a02f2d7ba8117e031056e01239a3a5fb
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-02-21 20:16:21 +00:00
Nicolas Graves c7f76fb837
gnu: node-serialport-parser-byte-length: Move in alphabetical order. 
* gnu/packages/node-xyz.scm (node-serialport-parser-byte-length): Move
package in alphabetical order.

Change-Id: I0b6126f11695c9e08fb51327a7a87385928d4472
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-02-21 20:16:21 +00:00
Nicolas Graves c4ea0a4114
gnu: node-serialport-bindings: Move package in alphabetical order. 
* /gnu/packages/node-xyz.scm (node-serialport-bindings): Move package
in alphabetical order.

Change-Id: I8a232d2160191386c5cd4e41ce62c6e9bea030d7
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-02-21 20:16:21 +00:00
Nicolas Graves e718c4a69f
gnu: node-serialport: Move package in alphabetical order. 
* /gnu/packages/node-xyz.scm

(node-serialport): Move package in alphabetical order. Remove
inheritance on node-serialport-binding-abstract, and add fields
build-system, home-page, and license.

(node-serialport-binding-abstract): Inherit from node-serialport and
remove fields source, build-system, home-page, and license.

(node-serialport-parser-delimiter, node-serialport-parser-readline,
node-serialport-bindings, node-serialport-parser-regex,
node-serialport-parser-ready,
node-serialport-parser-inter-byte-timeout,
node-serialport-parser-cctalk, node-serialport-parser-byte-length,
node-serialport-stream): Inherit from node-serialport instead of
node-serialport-binding-abstract.

Change-Id: Ib2c6bae11f9a7afeaa8566c86d1800afd40d22d3
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-02-21 20:16:07 +00:00
Ricardo Wurmus b3f4ad6cce
gnu: Add emacs-mu4e-column-faces. 
* gnu/packages/emacs-xyz.scm (emacs-mu4e-column-faces): New variable.

Change-Id: I6a28ad3d8a86ccd2b9963aa61b7d6a3a15479996
 2024-02-21 19:57:34 +01:00
Maxim Cournoyer ec9c8b0c1a
doc: Refine wording of binary installation introductory text. 
* doc/guix.texi (Binary Installation): Mention the requirement to use a
Hurd or Linux kernel for the binary installation.

Suggested-by: Matt <matt@excalamus.com>
Change-Id: Ibc0552f59be4fdaaf8d44a5222e6feb925d3f06f
 2024-02-21 12:05:00 -05:00
Maxim Cournoyer 5e66832ad4
gnu: mold: Update to 2.4.0. 
* gnu/packages/mold.scm (mold): Update to 2.4.0.
[source]: Streamline snippet.
[inputs]: Remove unused openssl input.

Change-Id: Iba4e7c1053459c5e765eb7089428149b49151e29
 2024-02-21 12:05:00 -05:00
Ricardo Wurmus ec6d6a51a3
gnu: Add r-options. 
* gnu/packages/cran.scm (r-options): New variable.

Change-Id: I5e005bc8933796b0e5a6028dec2678fd74cc425d
 2024-02-21 14:49:29 +01:00
Oleg Pykhalov fa222331bd
tests: install: Fix encrypted-root-not-boot-os test. 
Fix build failure caused by lack of free disk space.

* gnu/tests/install.scm (%test-encrypted-root-not-boot-os): Increase the root
partition to 1600 MiB.

Change-Id: I9f8378c37743ae8e59a72228b9e8bdbad93b4473
 2024-02-21 15:20:07 +03:00
Danny Milosavljevic afdcba7855
gnu: jbr: Update to 17.0.10-b1211.2. 
* gnu/packages/java.scm (jbr): Update to 17.0.10-b1211.2.

Change-Id: If08dc1f7d0c00f6ca2d2ebfb7daeca35cf3f665c
 2024-02-21 11:42:36 +01:00
Andre A. Gomes b71a270f6e
gnu: nyxt: Update to 3.11.3. 
* gnu/packages/web-browsers.scm (nyxt): Update to 3.11.3.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2024-02-21 11:10:52 +01:00
Ricardo Wurmus bb87745253
gnu: emacs-ess: Update to 24.01.1. 
* gnu/packages/statistics.scm (emacs-ess): Update to 24.01.1.
[source]: Remove patch to fix r-help-mode test.
[arguments]: Enable some tests; only run tests conditionally.

Change-Id: Ib341eac2d2e57cda7b2534bf88b0dd762b56281a
 2024-02-21 10:02:18 +01:00
Clément Lassieur 2c0ada2501
gnu: mullvadbrowser: Update to 13.0.10. 
* gnu/packages/tor-browsers.scm (%mullvadbrowser-build-date): Update to
20240213150358.
(%mullvadbrowser-version): Update to 13.0.10.
(%mullvadbrowser-firefox-version): Update to 115.8.0esr-13.0-1-build1.

Change-Id: Ia3c444e893bf7c3299d2d091c6c6578be272a782
 2024-02-21 02:55:40 +01:00
Tomas Volf b6f82b9ef1
gnu: linux-libre-documentation: Fix compilation. 
When compiling linux-libre-documentation@6.6.16, the compilation fails with
following error message:

------
    Exception occurred:
      File "/tmp/guix-build-linux-libre-documentation-6.6.16.drv-0/linux-6.6.16/Documentation/sphinx/kernel_feat.py", line 112, in run
        nodeList = self.nestedParse(out_lines, fname)
    UnboundLocalError: local variable 'fname' referenced before assignment
------

This is already fixed upstream[0], so this commit backports the change.

0: https://lore.kernel.org/all/20240206054907.066a0325@coco.lan/t/

* gnu/packages/linux.scm (linux-libre-documentation): Apply patch fixing
compilation.

Change-Id: Ic96f14aa25df09f38e029ca70d2647cbf37c2365
Signed-off-by: Leo Famulari <leo@famulari.name>
 2024-02-20 20:32:50 -05:00
Clément Lassieur 3bc2a7d0ed
gnu: torbrowser: Update to 13.0.10. 
* gnu/packages/tor-browsers.scm (%torbrowser-build-date): Update to
20240213172118.
(%torbrowser-version): Update to 13.0.10.
(%torbrowser-firefox-version): Update to 115.8.0esr-13.0-1-build1.
(translation-tor-browser): Update to a50fa943d7428ebe6e4e6b09f175e098a97eec63.

Change-Id: Idbb708d8bdd5e75bed1423c0748007864f96da0f
 2024-02-21 01:56:33 +01:00
Clément Lassieur 863e9766a6
gnu: ublock-origin: Update to 1.56.0. 
* gnu/packages/browser-extensions.scm (ublock-origin): Update to 1.56.0.
(ublock-main-assets): Update to b15998fae22b2b9593794b6b46647385b9c101d4.
(ublock-prod-assets): Update to 60fa7b4b33d5d257d9d0f1ee8db65c1e663f2d31.

Change-Id: I46c7241328f36b19756263b84c95a57145c72a40
 2024-02-21 01:56:33 +01:00
Tomas Volf e3c612a7de
gnu: ngtcp2: Update to 1.3.0. 
* gnu/packages/networking.scm (ngtcp2): Update to 1.3.0.
[native-inputs]: Remove cunit.

Change-Id: I5c1b411d4e7af0dc2bd33829b7c9ee1f2ac12a1e
Signed-off-by: Jelle Licht <jlicht@fsfe.org>
 2024-02-20 20:53:31 +01:00
Tomas Volf eeee279579
gnu: nghttp3: Update to 1.2.0. 
* gnu/packages/web.scm (nghttp3): Update to 1.2.0.
[native-inputs]: Remove cunit.

Change-Id: I802c0b7f11155afd8ce3b37a7fac2106fe61ccb4
Signed-off-by: Jelle Licht <jlicht@fsfe.org>
 2024-02-20 20:53:30 +01:00
Ricardo Wurmus d41e8843f6
gnu: alsa-scarlett-gui: Use ungexp. 
This is a follow-up to commit 5d81aa8613.

* gnu/packages/music.scm (alsa-scarlett-gui)[arguments]: Use #$output and
THIS-PACKAGE-INPUT instead of ASSOC-REF.

Change-Id: If56af33e361a215c63c5e004b81d2d0e84a2dd56
 2024-02-20 20:49:15 +01:00
Ricardo Wurmus 4d3c18b8fe
gnu: r-tam: Update to 4.2-21. 
* gnu/packages/cran.scm (r-tam): Update to 4.2-21.

Change-Id: I4931defa8c43a5432fbfa93ed40234faa589fead
 2024-02-20 20:20:55 +01:00
Ricardo Wurmus eaef954d65
gnu: r-imager: Update to 0.45.8. 
* gnu/packages/cran.scm (r-imager): Update to 0.45.8.

Change-Id: I5c3e2852d8136e77eec9810414623558cd01b7d8
 2024-02-20 20:20:55 +01:00
Ricardo Wurmus 3bbc870b61
gnu: r-ggforce: Update to 0.4.2. 
* gnu/packages/cran.scm (r-ggforce): Update to 0.4.2.

Change-Id: I619d7f55d43b8b4320f5162602e1a00fd5df8d5e
 2024-02-20 20:20:55 +01:00
Ricardo Wurmus cca2bc4441
gnu: r-usethis: Update to 2.2.3. 
* gnu/packages/cran.scm (r-usethis): Update to 2.2.3.

Change-Id: I69d069d6f068ac8a747d9d623b1c3e425046e730
 2024-02-20 20:20:55 +01:00
Ricardo Wurmus 81043e9f5a
gnu: r-acdm: Update to 1.0.4.3. 
* gnu/packages/cran.scm (r-acdm): Update to 1.0.4.3.

Change-Id: I6d22b039eea1f7947189fb141660901a75aa06b3
 2024-02-20 20:20:55 +01:00
Ricardo Wurmus 04208d8bfb
gnu: r-circlize: Update to 0.4.16. 
* gnu/packages/cran.scm (r-circlize): Update to 0.4.16.

Change-Id: Ic5f5f14c0b7abf8c20e06c127797c2cf02893bc8
 2024-02-20 20:20:55 +01:00
Ricardo Wurmus a66b3db343
gnu: r-callr: Update to 3.7.5. 
* gnu/packages/cran.scm (r-callr): Update to 3.7.5.

Change-Id: I0af56ae805e8a2fe7c0bd975bd25c65b136df249
 2024-02-20 20:20:55 +01:00
Ricardo Wurmus 3b5eb77819
gnu: r-ggvenndiagram: Update to 1.5.2. 
* gnu/packages/cran.scm (r-ggvenndiagram): Update to 1.5.2.

Change-Id: Id534fc82a43c3d88eaba708977626151d26385b4
 2024-02-20 20:20:55 +01:00
Ricardo Wurmus 601c25be01
gnu: r-boot: Update to 1.3-29. 
* gnu/packages/statistics.scm (r-boot): Update to 1.3-29.

Change-Id: Ia0e1c2da6c4cbae22466b4778309afaddf5a257b
 2024-02-20 20:20:55 +01:00
Ricardo Wurmus c3a8d20567
gnu: r-estimability: Update to 1.5. 
* gnu/packages/statistics.scm (r-estimability): Update to 1.5.
[native-inputs]: Add r-knitr.
[description]: Use complete sentence.

Change-Id: I9ed956ca7527a2316667813465bdb2bb47ebd516
 2024-02-20 20:20:55 +01:00
Ricardo Wurmus c35e55a7ee
gnu: r-dt: Update to 0.32. 
* gnu/packages/statistics.scm (r-dt): Update to 0.32.

Change-Id: I231ecc8a9606a8404f1bb5fccbcd5153d9cc7f7d
 2024-02-20 20:20:55 +01:00
Wilko Meyer 877abbdae7
gnu: linux-libre 6.7: Modify .conf files. 
* gnu/packages/aux-files/linux-libre/6.7-arm.conf,
  gnu/packages/aux-files/linux-libre/6.7-arm64.conf: Add platform support.

Change-Id: I90dee088ab11a31cb526b396d675e7bc22d67297
Signed-off-by: Leo Famulari <leo@famulari.name>
 2024-02-20 11:57:09 -05:00
Wilko Meyer d51ac34105
gnu: linux-libre 6.1: Update to 6.1.78. 
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.78.
  (linux-libre-6.1-pristine-source): Update hash.

Change-Id: I1293b6494fa26f2c786d8cbabe6c855610eca499
Signed-off-by: Leo Famulari <leo@famulari.name>
 2024-02-20 11:57:09 -05:00
Wilko Meyer a673109d08
gnu: linux-libre 6.6: Update to 6.6.17. 
* gnu/packages/linux.scm (linux-libre-6.6-version): Update to 6.6.17.
  (linux-libre-6.6-pristine-source): Update hashes.

Change-Id: I911c604ff188f80068ec49edaa8df5aab00439a7
Signed-off-by: Leo Famulari <leo@famulari.name>
 2024-02-20 11:57:08 -05:00
Wilko Meyer dc9ec00923
gnu: linux-libre 6.7: Update to 6.7.5. 
* gnu/packages/linux.scm (linux-libre-6.7-version): Update to 6.7.5.
  (linux-libre-6.7-pristine-source): Update hashes.

Change-Id: I29490cd45a43a960b380a23cfb810494ea238691
Signed-off-by: Leo Famulari <leo@famulari.name>
 2024-02-20 11:57:05 -05:00
Mark H Weaver 3d061d9677
gnu: icecat: Update to 115.8.0-guix0-preview1 [security fixes]. 
Includes fixes for CVE-2024-1546, CVE-2024-1547, CVE-2024-1548,
CVE-2024-1549, CVE-2024-1550, CVE-2024-1551, CVE-2024-1552, and
CVE-2024-1553.

* gnu/packages/gnuzilla.scm (%icecat-base-version, %icecat-build-id): Update.
(icecat-source): Update gnuzilla commit, base version, and hashes.
 2024-02-20 09:42:41 -05:00