gnu: Add r-biocio.
* gnu/packages/bioconductor.scm (r-biocio): New variable.
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@ -8867,3 +8867,39 @@ (define-public r-mscoreutils
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well as misc helper functions, that are used across high-level data structure
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within the R for Mass Spectrometry packages.")
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(license license:artistic2.0)))
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(define-public r-biocio
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(package
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(name "r-biocio")
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(version "1.0.1")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "BiocIO" version))
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(sha256
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(base32
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"06gg5ra3r7q4b6mz14c2s9d453cnh1lxh517ffl9f8dr8vwv5s18"))))
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(properties `((upstream-name . "BiocIO")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biocgenerics" ,r-biocgenerics)
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("r-genomicranges" ,r-genomicranges)
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("r-rcurl" ,r-rcurl)
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("r-s4vectors" ,r-s4vectors)))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://bioconductor.org/packages/BiocIO")
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(synopsis "Standard input and output for Bioconductor packages")
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(description
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"This package implements `import()` and `export()` standard generics for
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importing and exporting biological data formats. `import()` supports
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whole-file as well as chunk-wise iterative import. The `import()` interface
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optionally provides a standard mechanism for 'lazy' access via `filter()` (on
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row or element-like components of the file resource), `select()` (on
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column-like components of the file resource) and `collect()`. The `import()`
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interface optionally provides transparent access to remote (e.g. via https)
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as well as local access. Developers can register a file extension, e.g.,
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`.loom` for dispatch from character-based URIs to specific `import()` /
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`export()` methods based on classes representing file types, e.g.,
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`LoomFile()`.")
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(license license:artistic2.0)))
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