gnu: Add r-bandits.
* gnu/packages/bioconductor.scm (r-bandits): New variable.
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@ -2498,6 +2498,44 @@ (define-public r-bambu
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usage.")
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(license license:gpl3)))
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(define-public r-bandits
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(package
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(name "r-bandits")
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(version "1.12.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "BANDITS" version))
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(sha256
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(base32
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"1423djb7cij68y0q2dcp8q7lrcn2fxjn6d25v4qy3w00b2w8ppg9"))))
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(properties `((upstream-name . "BANDITS")))
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(build-system r-build-system)
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(propagated-inputs
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(list r-biocparallel
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r-data-table
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r-doparallel
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r-dorng
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r-drimseq
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r-foreach
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r-ggplot2
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r-mass
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r-r-utils
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r-rcpp
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r-rcpparmadillo))
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(native-inputs (list r-knitr))
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(home-page "https://github.com/SimoneTiberi/BANDITS")
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(synopsis "Bayesian analysis of differential splicing")
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(description
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"BANDITS is a Bayesian hierarchical model for detecting differential
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splicing of genes and transcripts, via @dfn{DTU} (differential transcript
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usage), between two or more conditions. The method uses a Bayesian
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hierarchical framework, which allows for sample specific proportions in a
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Dirichlet-Multinomial model, and samples the allocation of fragments to the
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transcripts. Parameters are inferred via @dfn{MCMC} (Markov chain Monte
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Carlo) techniques and a DTU test is performed via a multivariate Wald test on
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the posterior densities for the average relative abundance of transcripts.")
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(license license:gpl3+)))
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(define-public r-biocversion
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(package
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(name "r-biocversion")
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