gnu: Add r-scannotatr.

* gnu/packages/bioconductor.scm (r-scannotatr): New variable.
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zimoun 2022-03-08 20:06:12 +01:00 committed by Ricardo Wurmus
parent bec806e2fc
commit fdbc472bd1
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@ -4387,6 +4387,43 @@ (define-public r-samr
;; Any version of the LGPL
(license license:lgpl3+)))
(define-public r-scannotatr
(package
(name "r-scannotatr")
(version "1.0.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "scAnnotatR" version))
(sha256
(base32 "08jq04ckjw8a5y753almc5bl8vnn4j6qp2zb7bb9w3ql3ddy7b21"))))
(properties `((upstream-name . "scAnnotatR")))
(build-system r-build-system)
(propagated-inputs
(list r-annotationhub
r-ape
r-caret
r-data-tree
r-dplyr
r-e1071
r-ggplot2
r-kernlab
r-proc
r-rocr
r-seurat
r-singlecellexperiment
r-summarizedexperiment))
(native-inputs (list r-knitr))
(home-page "https://github.com/grisslab/scAnnotatR")
(synopsis "Pretrained models for prediction on single cell RNA-sequencing data")
(description
"This package comprises a set of pretrained machine learning models to
predict basic immune cell types. This enables to quickly get a first
annotation of the cell types present in the dataset without requiring prior
knowledge. The package also lets you train using own models to predict new
cell types based on specific research needs.")
(license license:expat)))
(define-public r-scdblfinder
(package
(name "r-scdblfinder")