gnu: Add python-pythran.
* gnu/packages/python-science.scm (python-pythran): New variable.
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@ -35,7 +35,9 @@ (define-module (gnu packages python-science)
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#:use-module ((guix licenses) #:prefix license:)
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#:use-module ((guix licenses) #:prefix license:)
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#:use-module (gnu packages)
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#:use-module (gnu packages)
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#:use-module (gnu packages base)
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#:use-module (gnu packages base)
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#:use-module (gnu packages boost)
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#:use-module (gnu packages check)
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#:use-module (gnu packages check)
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#:use-module (gnu packages cpp)
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#:use-module (gnu packages databases)
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#:use-module (gnu packages databases)
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#:use-module (gnu packages gcc)
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#:use-module (gnu packages gcc)
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#:use-module (gnu packages image-processing)
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#:use-module (gnu packages image-processing)
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@ -58,6 +60,7 @@ (define-module (gnu packages python-science)
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#:use-module (gnu packages xml)
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#:use-module (gnu packages xml)
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#:use-module (gnu packages xorg)
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#:use-module (gnu packages xorg)
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#:use-module (guix packages)
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#:use-module (guix packages)
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#:use-module (guix gexp)
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#:use-module (guix download)
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#:use-module (guix download)
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#:use-module (guix git-download)
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#:use-module (guix git-download)
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#:use-module (guix utils)
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#:use-module (guix utils)
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@ -509,6 +512,63 @@ (define-public python2-pyflow
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context of a task dependency graph. It has some similarities to make.")
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context of a task dependency graph. It has some similarities to make.")
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(license license:bsd-2)))
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(license license:bsd-2)))
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(define-public python-pythran
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(package
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(name "python-pythran")
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(version "0.11.0")
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(home-page "https://github.com/serge-sans-paille/pythran")
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(source (origin
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(method git-fetch)
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(uri (git-reference (url home-page) (commit version)))
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(file-name (git-file-name name version))
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(sha256
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(base32 "0cm7wfcyvkp1wmq7n1lyf2d3sj6158jf63bagjpjmfnjwij19n0p"))
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(modules '((guix build utils)))
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(snippet
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'(begin
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;; Remove bundled Boost and xsimd.
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(delete-file-recursively "third_party")))))
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(build-system python-build-system)
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(arguments
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(list #:phases
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#~(modify-phases %standard-phases
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(add-after 'unpack 'do-not-install-third-parties
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(lambda _
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(substitute* "setup.py"
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(("third_parties = .*")
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"third_parties = []\n"))))
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(replace 'check
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(lambda* (#:key tests? #:allow-other-keys)
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(when tests?
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;; Remove compiler flag that trips newer GCC:
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;; https://github.com/serge-sans-paille/pythran/issues/908
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(substitute* "pythran/tests/__init__.py"
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(("'-Wno-absolute-value',")
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""))
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(setenv "HOME" (getcwd))
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;; This setup is modelled after the upstream CI system.
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(call-with-output-file ".pythranrc"
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(lambda (port)
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(format port "[compiler]\nblas=openblas~%")))
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(invoke "pytest" "-vv"
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(string-append "--numprocesses="
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(number->string
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(parallel-job-count)))
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"pythran/tests/test_cases.py")))))))
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(native-inputs
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;; For tests.
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(list openblas python-pytest python-pytest-xdist))
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(propagated-inputs
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(list boost xsimd ;headers need to be available
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python-beniget python-gast python-numpy python-ply))
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(synopsis "Ahead of Time compiler for numeric kernels")
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(description
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"Pythran is an ahead of time compiler for a subset of the Python
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language, with a focus on scientific computing. It takes a Python module
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annotated with a few interface descriptions and turns it into a native
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Python module with the same interface, but (hopefully) faster.")
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(license license:bsd-3)))
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(define-public python-bottleneck
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(define-public python-bottleneck
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(package
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(package
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(name "python-bottleneck")
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(name "python-bottleneck")
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