gnu: Add blasr.
* gnu/packages/bioinformatics.scm (blasr): New variable.
This commit is contained in:
parent
6a6cd48cf0
commit
f88bdc5ff9
|
@ -596,6 +596,51 @@ (define-public blasr-libcpp
|
||||||
hdf and alignment.")
|
hdf and alignment.")
|
||||||
(license license:bsd-3)))
|
(license license:bsd-3)))
|
||||||
|
|
||||||
|
(define-public blasr
|
||||||
|
(package
|
||||||
|
(name "blasr")
|
||||||
|
(version "5.3.3")
|
||||||
|
(source (origin
|
||||||
|
(method git-fetch)
|
||||||
|
(uri (git-reference
|
||||||
|
(url "https://github.com/PacificBiosciences/blasr.git")
|
||||||
|
(commit version)))
|
||||||
|
(file-name (git-file-name name version))
|
||||||
|
(sha256
|
||||||
|
(base32
|
||||||
|
"1skgy2mvz8gsgfh1gc2nfgwvpyzb1hpmp2cf2773h5wsj8nw22kl"))))
|
||||||
|
(build-system meson-build-system)
|
||||||
|
(arguments
|
||||||
|
`(#:phases
|
||||||
|
(modify-phases %standard-phases
|
||||||
|
(add-after 'unpack 'link-with-hdf5
|
||||||
|
(lambda* (#:key inputs #:allow-other-keys)
|
||||||
|
(let ((hdf5 (assoc-ref inputs "hdf5")))
|
||||||
|
(substitute* "meson.build"
|
||||||
|
(("blasr_deps = \\[" m)
|
||||||
|
(string-append
|
||||||
|
m
|
||||||
|
(format #f "cpp.find_library('hdf5', dirs : '~a'), \
|
||||||
|
cpp.find_library('hdf5_cpp', dirs : '~a'), "
|
||||||
|
hdf5 hdf5)))))
|
||||||
|
#t)))
|
||||||
|
;; Tests require "cram" executable, which is not packaged.
|
||||||
|
#:tests? #f
|
||||||
|
#:configure-flags '("-Dtests=false")))
|
||||||
|
(inputs
|
||||||
|
`(("boost" ,boost)
|
||||||
|
("blasr-libcpp" ,blasr-libcpp)
|
||||||
|
("hdf5" ,hdf5)
|
||||||
|
("pbbam" ,pbbam)
|
||||||
|
("zlib" ,zlib)))
|
||||||
|
(native-inputs
|
||||||
|
`(("pkg-config" ,pkg-config)))
|
||||||
|
(home-page "")
|
||||||
|
(synopsis "PacBio long read aligner")
|
||||||
|
(description
|
||||||
|
"Blasr is a genomic sequence aligner for processing PacBio long reads.")
|
||||||
|
(license license:bsd-3)))
|
||||||
|
|
||||||
(define-public ribotaper
|
(define-public ribotaper
|
||||||
(package
|
(package
|
||||||
(name "ribotaper")
|
(name "ribotaper")
|
||||||
|
|
Loading…
Reference in a new issue