gnu: Add porechop.
* gnu/packages/bioinformatics.scm (porechop): New variable.
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@ -13869,3 +13869,33 @@ (define-public r-bseqsc
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and intra-cell population structure.\" Baron et al. Cell Systems (2016)
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@url{https://www.ncbi.nlm.nih.gov/pubmed/27667365}.")
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(license license:gpl2+))))
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(define-public porechop
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;; The recommended way to install is to clone the git repository
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;; https://github.com/rrwick/Porechop#installation
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(let ((commit "289d5dca4a5fc327f97b3f8cecb68ecaf1014861")
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(revision "1"))
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(package
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(name "porechop")
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(version (git-version "0.2.3" revision commit))
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/rrwick/Porechop.git")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32 "05ps43gig0d3ia9x5lj84lb00hbsl6ba9n7y7jz927npxbr2ym23"))))
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(build-system python-build-system)
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(home-page "https://github.com/rrwick/porechop")
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(synopsis "Finding, trimming or splitting adapters, in Oxford Nanopore reads")
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(description
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"The porechop package is a tool for finding and removing adapters from Oxford
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Nanopore reads. Adapters on the ends of reads are trimmed off, and when a read
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has an adapter in its middle, it is treated as chimeric and chopped into
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separate reads. Porechop performs thorough alignments to effectively find
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adapters, even at low sequence identity. Porechop also supports demultiplexing
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of Nanopore reads that were barcoded with the Native Barcoding Kit, PCR
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Barcoding Kit or Rapid Barcoding Kit.")
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(license license:gpl3+))))
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