gnu: Add r-fishpond.

* gnu/packages/bioconductor.scm (r-fishpond): New variable.
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Mădălin Ionel Patrașcu 2022-10-14 19:01:42 +02:00 committed by Ricardo Wurmus
parent fe7b421d05
commit f180a5990b
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@ -14585,6 +14585,44 @@ (define-public r-rgraphviz
objects from the @code{graph} package.")
(license license:epl1.0)))
(define-public r-fishpond
(package
(name "r-fishpond")
(version "2.2.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "fishpond" version))
(sha256
(base32
"0svp4yh0srhzbbxy1grchzdd9yzchadjp3d2sy2n9xpwxzpkhrym"))))
(properties `((upstream-name . "fishpond")))
(build-system r-build-system)
(inputs (list zlib))
(propagated-inputs
(list r-abind
r-genomicranges
r-gtools
r-iranges
r-jsonlite
r-matrix
r-matrixstats
r-qvalue
r-rcpp
r-s4vectors
r-singlecellexperiment
r-summarizedexperiment
r-svmisc))
(native-inputs (list r-knitr))
(home-page "https://github.com/mikelove/fishpond")
(synopsis "Downstream methods and tools for expression data")
(description
"The @code{fishpond} package contains methods for differential transcript
and gene expression analysis of RNA-seq data using inferential replicates for
uncertainty of abundance quantification, as generated by Gibbs sampling or
bootstrap sampling. Also the package contains a number of utilities for
working with Salmon and Alevin quantification files.")
(license license:gpl2)))
(define-public r-fithic
(package
(name "r-fithic")