gnu: Add r-fishpond.
* gnu/packages/bioconductor.scm (r-fishpond): New variable.
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@ -14585,6 +14585,44 @@ (define-public r-rgraphviz
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objects from the @code{graph} package.")
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objects from the @code{graph} package.")
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(license license:epl1.0)))
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(license license:epl1.0)))
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(define-public r-fishpond
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(package
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(name "r-fishpond")
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(version "2.2.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "fishpond" version))
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(sha256
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(base32
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"0svp4yh0srhzbbxy1grchzdd9yzchadjp3d2sy2n9xpwxzpkhrym"))))
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(properties `((upstream-name . "fishpond")))
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(build-system r-build-system)
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(inputs (list zlib))
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(propagated-inputs
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(list r-abind
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r-genomicranges
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r-gtools
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r-iranges
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r-jsonlite
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r-matrix
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r-matrixstats
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r-qvalue
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r-rcpp
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r-s4vectors
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r-singlecellexperiment
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r-summarizedexperiment
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r-svmisc))
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(native-inputs (list r-knitr))
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(home-page "https://github.com/mikelove/fishpond")
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(synopsis "Downstream methods and tools for expression data")
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(description
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"The @code{fishpond} package contains methods for differential transcript
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and gene expression analysis of RNA-seq data using inferential replicates for
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uncertainty of abundance quantification, as generated by Gibbs sampling or
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bootstrap sampling. Also the package contains a number of utilities for
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working with Salmon and Alevin quantification files.")
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(license license:gpl2)))
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(define-public r-fithic
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(define-public r-fithic
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(package
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(package
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(name "r-fithic")
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(name "r-fithic")
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