gnu: Add r-xcms.

* gnu/packages/bioconductor.scm (r-xcms): New variable.
This commit is contained in:
Ricardo Wurmus 2019-03-29 22:56:12 +01:00
parent c8310056f4
commit ec12e53736
No known key found for this signature in database
GPG key ID: 197A5888235FACAC

View file

@ -4004,3 +4004,39 @@ (define-public r-massspecwavelet
data mainly through the use of wavelet transforms. It supports peak detection
based on @dfn{Continuous Wavelet Transform} (CWT).")
(license license:lgpl2.0+)))
(define-public r-xcms
(package
(name "r-xcms")
(version "3.4.4")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "xcms" version))
(sha256
(base32
"073f25m7y8z4560k93d99fv72pr7nrgrp054zssi7jhas4l3ddww"))))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-biocparallel" ,r-biocparallel)
("r-lattice" ,r-lattice)
("r-massspecwavelet" ,r-massspecwavelet)
("r-msnbase" ,r-msnbase)
("r-multtest" ,r-multtest)
("r-mzr" ,r-mzr)
("r-plyr" ,r-plyr)
("r-protgenerics" ,r-protgenerics)
("r-rann" ,r-rann)
("r-rcolorbrewer" ,r-rcolorbrewer)
("r-robustbase" ,r-robustbase)
("r-s4vectors" ,r-s4vectors)))
(home-page "https://bioconductor.org/packages/xcms/")
(synopsis "LC/MS and GC/MS mass spectrometry data analysis")
(description
"This package provides a framework for processing and visualization of
chromatographically separated and single-spectra mass spectral data. It
imports from AIA/ANDI NetCDF, mzXML, mzData and mzML files. It preprocesses
data for high-throughput, untargeted analyte profiling.")
(license license:gpl2+)))