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gnu: Add python-plotnine.

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* gnu/packages/python-science.scm (python-plotnine): New variable.
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Ricardo Wurmus 2023-07-13 22:29:06 +02:00
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commit ea81a0417a
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gnu/packages/python-science.scm
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@ -50,6 +50,7 @@ (define-module (gnu packages python-science)
#:use-module (gnu packages crypto)
#:use-module (gnu packages databases)
#:use-module (gnu packages gcc)
#:use-module (gnu packages geo)
#:use-module (gnu packages image)
#:use-module (gnu packages image-processing)
#:use-module (gnu packages machine-learning)
@ -1470,6 +1471,103 @@ (define-public python-numpy-groupies
aggregated sum and more.")
(license license:bsd-3)))
(define-public python-plotnine
(package
(name "python-plotnine")
;; XXX Version 0.12.x exists, but we can't build it because we're still at
;; matplotlib 3.5. We'd need at least 3.6.
(version "0.10.1")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/has2k1/plotnine")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
"0lg53wcm00lj8zbb4q9yj4a0n0fqaqq7c7vj18bda0k56gg0fpwl"))))
(build-system pyproject-build-system)
(arguments
(list
#:test-flags
;; These all fail because the images are considered to be too different,
;; though they really do look fine.
'(list "-k" (string-append
"not TestThemes"
(string-join
(list
;; Image tests
"test_adjust_text"
"test_annotation_logticks_coord_flip_discrete"
"test_annotation_logticks_faceting"
"test_arrow"
"test_aslabeller_dict_0tag"
"test_caption_simple"
"test_continuous_x"
"test_continuous_x_fullrange"
"test_coord_trans_backtransforms"
"test_coord_trans_se_false"
"test_datetime_scale_limits"
"test_dir_v_ncol"
"test_discrete_x"
"test_discrete_x_fullrange"
"test_facet_grid_drop_false"
"test_facet_grid_expression"
"test_facet_grid_space_ratios"
"test_facet_wrap"
"test_facet_wrap_expression"
"test_facet_wrap_label_both"
"test_label_context_wrap2vars"
"test_labeller_cols_both_grid"
"test_labeller_cols_both_wrap"
"test_labeller_towords"
"test_missing_data_discrete_scale"
"test_ribbon_facetting"
"test_stack_non_linear_scale"
"test_uneven_num_of_lines"
;; Missing optional modules
"test_non_linear_smooth"
"test_non_linear_smooth_no_ci")
" and not " 'prefix)))
#:phases
'(modify-phases %standard-phases
(add-before 'check 'pre-check
(lambda* (#:key inputs outputs #:allow-other-keys)
;; The data files are referenced by the tests but they are not
;; installed.
(copy-recursively "plotnine/data"
(string-append (site-packages inputs outputs)
"/plotnine/data"))
;; Matplotlib needs to be able to write its configuration file
;; somewhere.
(setenv "MPLCONFIGDIR" "/tmp")
(setenv "TZ" "UTC")
(setenv "TZDIR"
(search-input-directory inputs "share/zoneinfo")))))))
(propagated-inputs
(list python-adjusttext
python-matplotlib
python-mizani
python-numpy
python-patsy
python-scipy
python-statsmodels))
(native-inputs
(list python-geopandas
python-mock
python-pandas
python-pytest python-pytest-cov
tzdata-for-tests))
(home-page "https://github.com/has2k1/plotnine")
(synopsis "Grammar of Graphics for Python")
(description
"Plotnine is a Python implementation of the Grammar of Graphics.
It is a powerful graphics concept for creating plots and visualizations in a
structured and declarative manner. It is inspired by the R package ggplot2
and aims to provide a similar API and functionality in Python.")
(license license:expat)))
(define-public python-pyvista
(package
(name "python-pyvista")