gnu: Add r-degreport.

* gnu/packages/bioconductor.scm (r-degreport): New variable.
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Ricardo Wurmus 2023-07-19 16:52:39 +02:00
parent cc14e04c8e
commit e332dfab61
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@ -4723,6 +4723,77 @@ (define-public r-deepsnv
bases such as COSMIC.")
(license license:gpl3)))
(define-public r-degreport
(package
(name "r-degreport")
(version "1.36.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "DEGreport" version))
(sha256
(base32
"15xm1l2qgsyzaw820a1fq5qdzh5pj4dmr1hx6s6b6wm2p02cvvai"))
(snippet
'(delete-file "docs/jquery.sticky-kit.min.js"))))
(properties `((upstream-name . "DEGreport")))
(build-system r-build-system)
(arguments
(list
#:phases
'(modify-phases %standard-phases
(add-after 'unpack 'process-javascript
(lambda* (#:key inputs #:allow-other-keys)
(invoke "esbuild"
(assoc-ref inputs "js-jquery-sticky-kit")
"--minify"
"--outfile=docs/jquery.sticky-kit.min.js"))))))
(propagated-inputs (list r-biobase
r-biocgenerics
r-broom
r-circlize
r-cluster
r-complexheatmap
r-consensusclusterplus
r-cowplot
r-deseq2
r-dplyr
r-edger
r-ggdendro
r-ggplot2
r-ggrepel
r-knitr
r-logging
r-magrittr
r-psych
r-rcolorbrewer
r-reshape
r-rlang
r-s4vectors
r-scales
r-stringr
r-summarizedexperiment
r-tibble
r-tidyr))
(native-inputs
`(("esbuild" ,esbuild)
("r-knitr" ,r-knitr)
("js-jquery-sticky-kit"
,(origin
(method url-fetch)
(uri "https://raw.githubusercontent.com/leafo/sticky-kit/\
v1.1.2/jquery.sticky-kit.js")
(sha256
(base32
"17c3a1hqc3ybwj7hpw8prazajp2x98aq7nyfn71h6lzjvblq297g"))))))
(home-page "https://lpantano.github.io/DEGreport/")
(synopsis "Report of DEG analysis")
(description
"This is a package for creating na HTML report of differential expression
analyses of count data. It integrates some of the code mentioned in DESeq2
and @code{edgeR} vignettes, and report a ranked list of genes according to the
fold changes mean and variability for each selected gene.")
(license license:expat)))
(define-public r-delayedarray
(package
(name "r-delayedarray")