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gnu: Add r-seurat5.

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* gnu/packages/cran.scm (r-seurat5): New variable.
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Ricardo Wurmus 2023-05-08 11:37:08 +02:00
parent c2a2d40e6d
commit e118b92cfe
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gnu/packages/cran.scm
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@ -34415,6 +34415,74 @@ (define-public r-seurat
discovery of differentially expressed genes and markers.")
(license license:gpl3)))
;; Seurat5 is only available via the seurat5 branch. It will replace r-seurat
;; eventually once it has been released to CRAN.
(define-public r-seurat5
(let ((commit "9d59c02042b9ae4f182fbde84cc8b18c0873ef4d")
(revision "1"))
(package
(inherit r-seurat)
(name "r-seurat5")
(version (git-version "4.9.9.9044" revision commit))
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/satijalab/seurat")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"0y4wl6aanq9scn2clazlxsar35g64v4sfy561j43fq1i85na7m4i"))))
(propagated-inputs (list r-cluster
r-cowplot
r-fastdummies
r-fitdistrplus
r-future
r-future-apply
r-generics
r-ggplot2
r-ggrepel
r-ggridges
r-httr
r-ica
r-igraph
r-irlba
r-jsonlite
r-kernsmooth
r-leiden
r-lifecycle
r-lmtest
r-mass
r-matrix
r-matrixstats
r-miniui
r-patchwork
r-pbapply
r-plotly
r-png
r-progressr
r-rann
r-rcolorbrewer
r-rcpp
r-rcppannoy
r-rcppeigen
r-rcpphnsw
r-rcppprogress
r-reticulate
r-rlang
r-rocr
r-rspectra
r-rtsne
r-scales
r-scattermore
r-sctransform
r-seurat5object
r-shiny
r-spatstat-explore
r-spatstat-geom
r-tibble
r-uwot)))))
(define-public r-seuratdisk
(let ((commit "163f1aade5bac38ed1e9e9c912283a7e74781610")
(revision "1"))