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gnu: r-org-hs-eg-db: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Move from here...
* gnu/packages/bioconductor.scm (r-org-hs-eg-db): ...to here.
This commit is contained in:
Ricardo Wurmus 2019-03-06 21:42:39 +01:00
parent f8780e96ff
commit d56df35a25
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GPG key ID: 197A5888235FACAC
2 changed files with 26 additions and 26 deletions
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26
gnu/packages/bioconductor.scm
View file

@ -438,6 +438,32 @@ (define-public r-org-dr-eg-db
based on mapping using Entrez Gene identifiers.")
(license license:artistic2.0)))
(define-public r-org-hs-eg-db
(package
(name "r-org-hs-eg-db")
(version "3.7.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"org.Hs.eg.db_" version ".tar.gz"))
(sha256
(base32
"1qxz9l80yg3qdqszs6dsscp7lrpfi1bgd0pxh9j7q34vprzwhdim"))))
(properties
`((upstream-name . "org.Hs.eg.db")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)))
(home-page "https://www.bioconductor.org/packages/org.Hs.eg.db/")
(synopsis "Genome wide annotation for Human")
(description
"This package contains genome-wide annotations for Human, primarily based
on mapping using Entrez Gene identifiers.")
(license license:artistic2.0)))
(define-public r-bsgenome-hsapiens-ucsc-hg19
(package
(name "r-bsgenome-hsapiens-ucsc-hg19")

26
gnu/packages/bioinformatics.scm
View file

@ -7980,32 +7980,6 @@ (define-public r-genomationdata
downloaded from Encode.")
(license license:gpl3+)))
(define-public r-org-hs-eg-db
(package
(name "r-org-hs-eg-db")
(version "3.7.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"org.Hs.eg.db_" version ".tar.gz"))
(sha256
(base32
"1qxz9l80yg3qdqszs6dsscp7lrpfi1bgd0pxh9j7q34vprzwhdim"))))
(properties
`((upstream-name . "org.Hs.eg.db")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)))
(home-page "https://www.bioconductor.org/packages/org.Hs.eg.db/")
(synopsis "Genome wide annotation for Human")
(description
"This package contains genome-wide annotations for Human, primarily based
on mapping using Entrez Gene identifiers.")
(license license:artistic2.0)))
(define-public r-org-mm-eg-db
(package
(name "r-org-mm-eg-db")