gnu: r-mzr: Update to 2.30.0.

* gnu/packages/bioconductor.scm (r-mzr): Update to 2.30.0.
[propagated-inputs]: Remove r-zlibbioc.
[inputs]: Replace boost-for-mysql with boost.
This commit is contained in:
Ricardo Wurmus 2022-05-28 12:44:42 +02:00
parent 3eb763c2ba
commit d1134b61fd
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@ -4497,19 +4497,17 @@ (define-public r-mzid
(define-public r-mzr
(package
(name "r-mzr")
(version "2.28.0")
(version "2.30.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "mzR" version))
(sha256
(base32
"1azq0wjjy6n5xc721gjz6afm43ajz15b4p34vgsdjzwg9qn1vrs1"))
"1dqa03hb42kbqfg15ksijdkyf9pr54gcl3in4mzjkld5sdi8ncds"))
(modules '((guix build utils)))
(snippet
'(begin
(delete-file-recursively "src/boost")
#t))))
'(delete-file-recursively "src/boost"))))
(properties `((upstream-name . "mzR")))
(build-system r-build-system)
(arguments
@ -4523,12 +4521,9 @@ (define-public r-mzr
(("\\ARCH_OBJS=" line)
(string-append line
"\nBOOST_LIBS=-lboost_system -lboost_regex \
-lboost_iostreams -lboost_thread -lboost_filesystem -lboost_chrono\n")))
#t)))))
-lboost_iostreams -lboost_thread -lboost_filesystem -lboost_chrono\n"))))))))
(inputs
(list ;; Our default boost package won't work here, unfortunately, even with
;; mzR version 2.28.0.
boost-for-mysql ; use this instead of the bundled boost sources
(list boost ; use this instead of the bundled boost sources
zlib))
(propagated-inputs
(list r-biobase
@ -4536,8 +4531,7 @@ (define-public r-mzr
r-ncdf4
r-protgenerics
r-rcpp
r-rhdf5lib
r-zlibbioc))
r-rhdf5lib))
(native-inputs
(list r-knitr))
(home-page "https://github.com/sneumann/mzR/")