gnu: r-mzr: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.30.0. [propagated-inputs]: Remove r-zlibbioc. [inputs]: Replace boost-for-mysql with boost.
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1 changed files with 6 additions and 12 deletions
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@ -4497,19 +4497,17 @@ (define-public r-mzid
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(define-public r-mzr
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(package
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(name "r-mzr")
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(version "2.28.0")
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(version "2.30.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "mzR" version))
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(sha256
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(base32
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"1azq0wjjy6n5xc721gjz6afm43ajz15b4p34vgsdjzwg9qn1vrs1"))
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"1dqa03hb42kbqfg15ksijdkyf9pr54gcl3in4mzjkld5sdi8ncds"))
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(modules '((guix build utils)))
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(snippet
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'(begin
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(delete-file-recursively "src/boost")
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#t))))
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'(delete-file-recursively "src/boost"))))
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(properties `((upstream-name . "mzR")))
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(build-system r-build-system)
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(arguments
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@ -4523,12 +4521,9 @@ (define-public r-mzr
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(("\\ARCH_OBJS=" line)
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(string-append line
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"\nBOOST_LIBS=-lboost_system -lboost_regex \
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-lboost_iostreams -lboost_thread -lboost_filesystem -lboost_chrono\n")))
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#t)))))
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-lboost_iostreams -lboost_thread -lboost_filesystem -lboost_chrono\n"))))))))
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(inputs
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(list ;; Our default boost package won't work here, unfortunately, even with
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;; mzR version 2.28.0.
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boost-for-mysql ; use this instead of the bundled boost sources
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(list boost ; use this instead of the bundled boost sources
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zlib))
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(propagated-inputs
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(list r-biobase
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@ -4536,8 +4531,7 @@ (define-public r-mzr
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r-ncdf4
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r-protgenerics
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r-rcpp
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r-rhdf5lib
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r-zlibbioc))
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r-rhdf5lib))
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(native-inputs
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(list r-knitr))
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(home-page "https://github.com/sneumann/mzR/")
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