From cad6fb2dec67e41498ee4cf9026ea5d12d8050e6 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sat, 12 Jan 2019 23:07:29 +0100 Subject: [PATCH] gnu: Add r-plgem. * gnu/packages/bioconductor.scm (r-plgem): New variable. --- gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 06dc258005..0ded2a7b67 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -852,6 +852,31 @@ (define-public r-rots in omics data.") (license license:gpl2+))) +(define-public r-plgem + (package + (name "r-plgem") + (version "1.54.1") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "plgem" version)) + (sha256 + (base32 + "1330635db3p8xm5y8fwrk1l37r6bgypsq70s3rx954i775zp6szg")))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-mass" ,r-mass))) + (home-page "http://www.genopolis.it") + (synopsis "Detect differential expression in microarray and proteomics datasets") + (description + "The Power Law Global Error Model (PLGEM) has been shown to faithfully +model the variance-versus-mean dependence that exists in a variety of +genome-wide datasets, including microarray and proteomics data. The use of +PLGEM has been shown to improve the detection of differentially expressed +genes or proteins in these datasets.") + (license license:gpl2))) + (define-public r-inspect (package (name "r-inspect")