gnu: Add python-mofax.

* gnu/packages/bioinformatics.scm (python-mofax): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
This commit is contained in:
Navid Afkhami 2023-06-09 16:05:57 +02:00 committed by Ricardo Wurmus
parent 6dc44cc963
commit c348b1be38
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@ -3312,6 +3312,51 @@ (define-public python-bx-python
multiple sequence alignments.")
(license license:expat)))
(define-public python-mofax
;; This is a recent commit from the "dev" branch, which is much more recent
;; than the latest commit from the "master" branch.
(let ((commit "4d96f8f0a5d5251847353656f523684d66c3c47a")
(revision "0"))
(package
(name "python-mofax")
(version (git-version "0.4.0" revision commit))
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/bioFAM/mofax")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"1lwrw0qyvvnyiqz1l20dhcf7dxidb80cqgvk78czvdgba87yxzqx"))
(modules '((guix build utils)))
;; Prevent the pyproject-build-system from guessing that flit
;; should be used as a builder.
(snippet '(substitute* "pyproject.toml"
(("^#.*") "")))))
(build-system pyproject-build-system)
(arguments
(list
;; This test is failing due to a bug. The bug has been reported to the
;; developers. See https://github.com/bioFAM/mofax/issues/12 for more
;; info.
#:test-flags '(list "-k" "not test_get_methods")))
(propagated-inputs (list python-h5py
python-matplotlib
python-pandas
python-poetry-core
python-scipy
python-seaborn))
(native-inputs (list python-numpy python-pytest))
(home-page "https://github.com/bioFAM/mofax")
(synopsis
"Motif activity finder for transcription factor motif analysis")
(description
"MoFax is a Python package for transcription factor motif analysis.
It provides convenience functions to load and visualize factor models trained
with MOFA+ in Python.")
(license license:expat))))
(define-public python-pyega3
(package
(name "python-pyega3")