gnu: Add r-aspli.

* gnu/packages/bioconductor.scm (r-aspli): New variable.
This commit is contained in:
Mădălin Ionel Patrașcu 2022-06-22 16:46:12 +02:00 committed by Ricardo Wurmus
parent a8e0069f87
commit b8b91756ab
No known key found for this signature in database
GPG key ID: 197A5888235FACAC

View file

@ -2317,6 +2317,54 @@ (define-public r-antiprofiles
tumor samples from healthy controls.")
(license license:artistic2.0)))
(define-public r-aspli
(package
(name "r-aspli")
(version "2.6.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "ASpli" version))
(sha256
(base32
"1frlcwa8m4imfx6ncav8r8yskyaf4ibha177mfnp9y84w6mphynz"))))
(properties `((upstream-name . "ASpli")))
(build-system r-build-system)
(propagated-inputs
(list r-annotationdbi
r-biocgenerics
r-biocstyle
r-data-table
r-dt
r-edger
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-gviz
r-htmltools
r-igraph
r-iranges
r-limma
r-mass
r-pbmcapply
r-rsamtools
r-s4vectors
r-tidyr
r-upsetr))
(home-page "https://bioconductor.org/packages/ASpli")
(synopsis "Analysis of alternative splicing using RNA-Seq")
(description
"@dfn{AS} (alternative splicing) is a common mechanism of
post-transcriptional gene regulation in eukaryotic organisms that expands the
functional and regulatory diversity of a single gene by generating multiple
mRNA isoforms that encode structurally and functionally distinct proteins.
ASpli is an integrative pipeline and user-friendly R package that facilitates
the analysis of changes in both annotated and novel AS events. ASpli
integrates several independent signals in order to deal with the complexity
that might arise in splicing patterns.")
;; The authors didn't specify any GPL version in description or in the
;; sources.
(license (list license:gpl2+ license:gpl3+))))
(define-public r-assessorf
(package
(name "r-assessorf")