gnu: Add r-aneufinder.
* gnu/packages/bioconductor.scm (r-aneufinder): New variable.
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@ -950,6 +950,48 @@ (define-public r-aneufinderdata
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(description "This package contains data used by @code{AneuFinder}.")
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(license license:artistic2.0)))
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(define-public r-aneufinder
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(package
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(name "r-aneufinder")
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(version "1.18.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "AneuFinder" version))
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(sha256
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(base32
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"1j2n6i3ja63i98y1mbb8ndn6cn2a0pw97zz6al4myycnv55w49j3"))))
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(build-system r-build-system)
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(propagated-inputs
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`(("r-genomicranges" ,r-genomicranges)
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("r-aneufinderdata" ,r-aneufinderdata)
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("r-ecp" ,r-ecp)
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("r-foreach" ,r-foreach)
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("r-doparallel" ,r-doparallel)
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("r-biocgenerics" ,r-biocgenerics)
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("r-s4vectors" ,r-s4vectors)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-iranges" ,r-iranges)
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("r-rsamtools" ,r-rsamtools)
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("r-bamsignals" ,r-bamsignals)
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("r-dnacopy" ,r-dnacopy)
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("r-biostrings" ,r-biostrings)
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("r-genomicalignments" ,r-genomicalignments)
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("r-ggplot2" ,r-ggplot2)
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("r-reshape2" ,r-reshape2)
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("r-ggdendro" ,r-ggdendro)
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("r-ggrepel" ,r-ggrepel)
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("r-reordercluster" ,r-reordercluster)
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("r-mclust" ,r-mclust)
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("r-cowplot" ,r-cowplot)))
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(home-page "https://bioconductor.org/packages/AneuFinder/")
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(synopsis "Copy number variation analysis in single-cell-sequencing data")
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(description "This package implements functions for copy number variant
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calling, plotting, export and analysis from whole-genome single cell
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sequencing data.")
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(license license:artistic2.0)))
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(define-public r-arrmdata
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(package
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(name "r-arrmdata")
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