gnu: bwa-pssm: Fix build.

* gnu/packages/bioinformatics.scm (bwa-pssm)[arguments]: Add phase 'patch-C-error.
2021-12-07 17:53:14 +01:00 · 2021-12-07 17:53:14 +01:00 · b764d10e91
parent 4195a877cb
commit b764d10e91
1 changed files with 8 additions and 0 deletions
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@ -2243,6 +2243,14 @@ (define-public bwa-pssm
               (base32
                "076c4q0cdqz8jgylb067y9zmvxglppnzi3qiscn0xiypgc6lgb5r"))))
    (build-system gnu-build-system)
+    (arguments
+     (substitute-keyword-arguments (package-arguments bwa)
+       ((#:phases phases '%standard-phases)
+        `(modify-phases ,phases
+           (add-after 'unpack 'patch-C-error
+             (lambda _
+               (substitute* "pssm.c"
+                 (("inline int map") "int map"))))))))
    (inputs
     `(("gdsl" ,gdsl)
       ("zlib" ,zlib)