gnu: Add r-cicero.

* gnu/packages/bioconductor.scm (r-cicero): New variable.
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Ricardo Wurmus 2019-07-30 15:22:40 +02:00
parent 79f04920b2
commit b46a0ee753
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@ -5024,3 +5024,44 @@ (define-public r-depecher
by a sparse number of variables, this method can reduce the complexity of by a sparse number of variables, this method can reduce the complexity of
data, to only emphasize the data that actually matters.") data, to only emphasize the data that actually matters.")
(license license:expat))) (license license:expat)))
(define-public r-cicero
(package
(name "r-cicero")
(version "1.2.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "cicero" version))
(sha256
(base32
"0f15l8zrh7l7nnvznb66116hvfk15djb9q240vbscm2w0y5fvkcr"))))
(build-system r-build-system)
(propagated-inputs
`(("r-assertthat" ,r-assertthat)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-data-table" ,r-data-table)
("r-dplyr" ,r-dplyr)
("r-fnn" ,r-fnn)
("r-genomicranges" ,r-genomicranges)
("r-ggplot2" ,r-ggplot2)
("r-glasso" ,r-glasso)
("r-gviz" ,r-gviz)
("r-igraph" ,r-igraph)
("r-iranges" ,r-iranges)
("r-matrix" ,r-matrix)
("r-monocle" ,r-monocle)
("r-plyr" ,r-plyr)
("r-reshape2" ,r-reshape2)
("r-s4vectors" ,r-s4vectors)
("r-stringr" ,r-stringr)
("r-tibble" ,r-tibble)
("r-vgam" ,r-vgam)))
(home-page "https://bioconductor.org/packages/cicero/")
(synopsis "Predict cis-co-accessibility from single-cell data")
(description
"Cicero computes putative cis-regulatory maps from single-cell chromatin
accessibility data. It also extends the monocle package for use in chromatin
accessibility data.")
(license license:expat)))