gnu: Add r-cicero.
* gnu/packages/bioconductor.scm (r-cicero): New variable.
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@ -5024,3 +5024,44 @@ (define-public r-depecher
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by a sparse number of variables, this method can reduce the complexity of
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by a sparse number of variables, this method can reduce the complexity of
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data, to only emphasize the data that actually matters.")
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data, to only emphasize the data that actually matters.")
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(license license:expat)))
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(license license:expat)))
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(define-public r-cicero
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(package
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(name "r-cicero")
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(version "1.2.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "cicero" version))
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(sha256
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(base32
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"0f15l8zrh7l7nnvznb66116hvfk15djb9q240vbscm2w0y5fvkcr"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-assertthat" ,r-assertthat)
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("r-biobase" ,r-biobase)
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("r-biocgenerics" ,r-biocgenerics)
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("r-data-table" ,r-data-table)
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("r-dplyr" ,r-dplyr)
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("r-fnn" ,r-fnn)
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("r-genomicranges" ,r-genomicranges)
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("r-ggplot2" ,r-ggplot2)
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("r-glasso" ,r-glasso)
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("r-gviz" ,r-gviz)
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("r-igraph" ,r-igraph)
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("r-iranges" ,r-iranges)
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("r-matrix" ,r-matrix)
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("r-monocle" ,r-monocle)
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("r-plyr" ,r-plyr)
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("r-reshape2" ,r-reshape2)
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("r-s4vectors" ,r-s4vectors)
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("r-stringr" ,r-stringr)
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("r-tibble" ,r-tibble)
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("r-vgam" ,r-vgam)))
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(home-page "https://bioconductor.org/packages/cicero/")
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(synopsis "Predict cis-co-accessibility from single-cell data")
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(description
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"Cicero computes putative cis-regulatory maps from single-cell chromatin
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accessibility data. It also extends the monocle package for use in chromatin
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accessibility data.")
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(license license:expat)))
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