gnu: Add r-cicero.

* gnu/packages/bioconductor.scm (r-cicero): New variable.
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Ricardo Wurmus 2019-07-30 15:22:40 +02:00
parent 79f04920b2
commit b46a0ee753
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@ -5024,3 +5024,44 @@ (define-public r-depecher
by a sparse number of variables, this method can reduce the complexity of
data, to only emphasize the data that actually matters.")
(license license:expat)))
(define-public r-cicero
(package
(name "r-cicero")
(version "1.2.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "cicero" version))
(sha256
(base32
"0f15l8zrh7l7nnvznb66116hvfk15djb9q240vbscm2w0y5fvkcr"))))
(build-system r-build-system)
(propagated-inputs
`(("r-assertthat" ,r-assertthat)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-data-table" ,r-data-table)
("r-dplyr" ,r-dplyr)
("r-fnn" ,r-fnn)
("r-genomicranges" ,r-genomicranges)
("r-ggplot2" ,r-ggplot2)
("r-glasso" ,r-glasso)
("r-gviz" ,r-gviz)
("r-igraph" ,r-igraph)
("r-iranges" ,r-iranges)
("r-matrix" ,r-matrix)
("r-monocle" ,r-monocle)
("r-plyr" ,r-plyr)
("r-reshape2" ,r-reshape2)
("r-s4vectors" ,r-s4vectors)
("r-stringr" ,r-stringr)
("r-tibble" ,r-tibble)
("r-vgam" ,r-vgam)))
(home-page "https://bioconductor.org/packages/cicero/")
(synopsis "Predict cis-co-accessibility from single-cell data")
(description
"Cicero computes putative cis-regulatory maps from single-cell chromatin
accessibility data. It also extends the monocle package for use in chromatin
accessibility data.")
(license license:expat)))