gnu: Add prodigal.
* gnu/packages/bioinformatics.scm (prodigal): New variable.
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@ -1600,6 +1600,37 @@ (define-public pbtranscript-tofu
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generated using the PacBio Iso-Seq protocol.")
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generated using the PacBio Iso-Seq protocol.")
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(license license:bsd-3))))
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(license license:bsd-3))))
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(define-public prodigal
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(package
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(name "prodigal")
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(version "2.6.2")
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(source (origin
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(method url-fetch)
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(uri (string-append
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"https://github.com/hyattpd/Prodigal/archive/v"
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version ".tar.gz"))
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(file-name (string-append name "-" version ".tar.gz"))
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(sha256
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(base32
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"0m8sb0fg6lmxrlpzna0am6svbnlmd3dckrhgzxxgb3gxr5fyj284"))))
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(build-system gnu-build-system)
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(arguments
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`(#:tests? #f ;no check target
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#:make-flags (list (string-append "INSTALLDIR="
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(assoc-ref %outputs "out")
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"/bin"))
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#:phases
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(modify-phases %standard-phases
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(delete 'configure))))
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(home-page "http://prodigal.ornl.gov")
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(synopsis "Protein-coding gene prediction for Archaea and Bacteria")
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(description
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"Prodigal runs smoothly on finished genomes, draft genomes, and
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metagenomes, providing gene predictions in GFF3, Genbank, or Sequin table
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format. It runs quickly, in an unsupervised fashion, handles gaps, handles
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partial genes, and identifies translation initiation sites.")
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(license license:gpl3+)))
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(define-public rsem
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(define-public rsem
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(package
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(package
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(name "rsem")
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(name "rsem")
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