gnu: Add r-screpertoire.

* gnu/packages/bioconductor.scm (r-screpertoire): New variable.

Change-Id: Iaa876f787d5e39ca2888bf2082da3d7839224e15
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Mădălin Ionel Patrașcu 2023-11-03 17:30:04 +01:00 committed by Ricardo Wurmus
parent 01b7d917a2
commit adf716c171
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@ -10291,6 +10291,49 @@ (define-public r-scmap
different experiment.")
(license license:gpl3)))
(define-public r-screpertoire
(package
(name "r-screpertoire")
(version "1.12.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "scRepertoire" version))
(sha256
(base32 "1wgs8dv5zl82iciy86w5ws1gq8v2piklcifbw7gmbw60kijyr2l1"))))
(properties `((upstream-name . "scRepertoire")))
(build-system r-build-system)
(propagated-inputs
(list r-doparallel
r-dplyr
r-ggalluvial
r-ggplot2
r-ggraph
r-igraph
r-plyr
r-powertcr
r-reshape2
r-rlang
r-seuratobject
r-singlecellexperiment
r-stringdist
r-stringr
r-summarizedexperiment
r-tidygraph
r-vegan))
(native-inputs (list r-knitr))
(home-page "https://bioconductor.org/packages/scRepertoire")
(synopsis "Toolkit for single-cell immune receptor profiling")
(description
"The scRepertoire package was built to process data derived from the 10x
Genomics Chromium Immune Profiling for both @acronym{TCR, T-cell receptor} and
@acronym{Ig, immunoglobulin} enrichment workflows and subsequently interacts with
the popular Seurat and SingleCellExperiment R packages. It also allows for
general analysis of single-cell clonotype information without the use of
expression information. The package functions as a wrapper for Startrac and
powerTCR R packages.")
(license license:gpl2)))
(define-public r-scry
(package
(name "r-scry")