From aa9a94bba9a5705c6a4bfb19268dc616b7f4f7d3 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 4 May 2021 07:09:50 +0200
Subject: [PATCH] gnu: r-abn: Update to 2.5-0.

* gnu/packages/cran.scm (r-abn): Move from here...
* gnu/packages/bioconductor.scm (r-abn): ...to here; update to 2.5-0.
[propagated-inputs]: Add r-rgraphviz.
---
 gnu/packages/bioconductor.scm | 38 +++++++++++++++++++++++++++++++++++
 gnu/packages/cran.scm         | 35 --------------------------------
 2 files changed, 38 insertions(+), 35 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index c1454f25e8..da6650b191 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -10996,6 +10996,44 @@ (define-public r-ldheatmap
 on the plot.")
     (license license:gpl3)))
 
+;; This is a CRAN package, but it depends on r-rgraphviz, which is a
+;; Bioconductor package.
+(define-public r-abn
+  (package
+    (name "r-abn")
+    (version "2.5-0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "abn" version))
+       (sha256
+        (base32
+         "1fqmhw0mhdl6az1gpg0byvx5snhz1pl3fqikhyfjcjrc9xbsq8yw"))))
+    (build-system r-build-system)
+    (inputs
+     `(("gsl" ,gsl)))
+    (propagated-inputs
+     `(("r-lme4" ,r-lme4)
+       ("r-nnet" ,r-nnet)
+       ("r-rcpp" ,r-rcpp)
+       ("r-rcpparmadillo" ,r-rcpparmadillo)
+       ("r-rgraphviz" ,r-rgraphviz)
+       ("r-rjags" ,r-rjags)))
+    (home-page "https://r-bayesian-networks.org/")
+    (synopsis "Modelling multivariate data with additive bayesian networks")
+    (description
+     "Bayesian network analysis is a form of probabilistic graphical models
+which derives from empirical data a directed acyclic graph, DAG, describing
+the dependency structure between random variables.  An additive Bayesian
+network model consists of a form of a DAG where each node comprises a
+@dfn{generalized linear model} (GLM).  Additive Bayesian network models are
+equivalent to Bayesian multivariate regression using graphical modelling, they
+generalises the usual multivariable regression, GLM, to multiple dependent
+variables.  This package provides routines to help determine optimal Bayesian
+network models for a given data set, where these models are used to identify
+statistical dependencies in messy, complex data.")
+    (license license:gpl2+)))
+
 (define-public r-pathview
   (package
     (name "r-pathview")
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 35c35e6716..d5b71d65d3 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -8037,41 +8037,6 @@ (define-public r-entropy
 there are functions for discretizing continuous random variables.")
     (license license:gpl3+)))
 
-(define-public r-abn
-  (package
-    (name "r-abn")
-    (version "2.3-0")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (cran-uri "abn" version))
-       (sha256
-        (base32
-         "17vdrqm6qp5aijg00ah2imj3pqr6cl5r43hgg8dijbrbhznarci6"))))
-    (build-system r-build-system)
-    (inputs
-     `(("gsl" ,gsl)))
-    (propagated-inputs
-     `(("r-lme4" ,r-lme4)
-       ("r-nnet" ,r-nnet)
-       ("r-rcpp" ,r-rcpp)
-       ("r-rcpparmadillo" ,r-rcpparmadillo)
-       ("r-rjags" ,r-rjags)))
-    (home-page "https://r-bayesian-networks.org/")
-    (synopsis "Modelling multivariate data with additive bayesian networks")
-    (description
-     "Bayesian network analysis is a form of probabilistic graphical models
-which derives from empirical data a directed acyclic graph, DAG, describing
-the dependency structure between random variables.  An additive Bayesian
-network model consists of a form of a DAG where each node comprises a
-@dfn{generalized linear model} (GLM).  Additive Bayesian network models are
-equivalent to Bayesian multivariate regression using graphical modelling, they
-generalises the usual multivariable regression, GLM, to multiple dependent
-variables.  This package provides routines to help determine optimal Bayesian
-network models for a given data set, where these models are used to identify
-statistical dependencies in messy, complex data.")
-    (license license:gpl2+)))
-
 (define-public r-acd
   (package
     (name "r-acd")