From a8e0069f87d65185bd426041373051de80057414 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= Date: Thu, 23 Jun 2022 11:42:57 +0200 Subject: [PATCH] gnu: Add r-assessorf. * gnu/packages/bioconductor.scm (r-assessorf): New variable. --- gnu/packages/bioconductor.scm | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index a0ecec8498..67a62faa46 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2317,6 +2317,35 @@ (define-public r-antiprofiles tumor samples from healthy controls.") (license license:artistic2.0))) +(define-public r-assessorf + (package + (name "r-assessorf") + (version "1.14.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "AssessORF" version)) + (sha256 + (base32 + "1l87bpny9k3jbzbzmb9h2ijvblrj471gqv26fyzbvb3vr6y406z7")))) + (properties `((upstream-name . "AssessORF"))) + (build-system r-build-system) + (propagated-inputs + (list r-biostrings + r-decipher + r-genomicranges + r-iranges)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/AssessORF") + (synopsis "Assess gene predictions using proteomics and evolutionary conservation") + (description + "In order to assess the quality of a set of predicted genes for a genome, +evidence must first be mapped to that genome. Next, each gene must be +categorized based on how strong the evidence is for or against that gene. The +AssessORF package provides the functions and class structures necessary for +accomplishing those tasks, using proteomics hits and evolutionarily conserved +start codons as the forms of evidence.") + (license license:gpl3))) + (define-public r-asset (package (name "r-asset")