gnu: Add gdc-client.

* gnu/packages/bioinformatics.scm (gdc-client): New variable.
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Ricardo Wurmus 2021-10-21 14:49:01 +00:00
parent f65917f607
commit a8bac123f0
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@ -7841,6 +7841,46 @@ (define-public r-demultiplex
")
(license license:cc0))))
(define-public gdc-client
(package
(name "gdc-client")
(version "1.6.0")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/NCI-GDC/gdc-client.git")
(commit version)))
(file-name (git-file-name name version))
(sha256
(base32
"0cagawlzjwj3wam10lv64xgbfx4zcnzxi5sjpsdhq7rn4z24mzc2"))))
(build-system python-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'relax-requirements
(lambda _
(substitute* "requirements.txt"
(("==") ">=")))))))
(inputs
`(("python-cryptography" ,python-cryptography)
("python-intervaltree" ,python-intervaltree)
("python-jsonschema" ,python-jsonschema)
("python-lxml" ,python-lxml)
("python-ndg-httpsclient" ,python-ndg-httpsclient)
("python-progressbar2" ,python-progressbar2)
("python-pyasn1" ,python-pyasn1)
("python-pyopenssl" ,python-pyopenssl)
("python-pyyaml" ,python-pyyaml)
("python-requests" ,python-requests)
("python-termcolor" ,python-termcolor)))
(home-page "https://gdc.nci.nih.gov/access-data/gdc-data-transfer-tool")
(synopsis "GDC data transfer tool")
(description "The gdc-client provides several convenience functions over
the GDC API which provides general download/upload via HTTPS.")
(license license:asl2.0)))
(define-public vsearch
(package
(name "vsearch")