gnu: Add r-batchelor.

* gnu/packages/bioconductor.scm (r-batchelor): New variable.
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Ricardo Wurmus 2021-06-21 17:51:43 +02:00
parent 278e1c090e
commit a41bddd29d
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@ -6236,6 +6236,49 @@ (define-public r-residualmatrix
multiplication and calculation of row/column sums or means.")
(license license:gpl3)))
(define-public r-batchelor
(package
(name "r-batchelor")
(version "1.8.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "batchelor" version))
(sha256
(base32
"1xm204wp3m3mmlc1s59lscbbjvwm5nj32vvf16njcg7pb32lsiqa"))))
(properties `((upstream-name . "batchelor")))
(build-system r-build-system)
(propagated-inputs
`(("r-beachmat" ,r-beachmat)
("r-biocgenerics" ,r-biocgenerics)
("r-biocneighbors" ,r-biocneighbors)
("r-biocparallel" ,r-biocparallel)
("r-biocsingular" ,r-biocsingular)
("r-delayedarray" ,r-delayedarray)
("r-delayedmatrixstats" ,r-delayedmatrixstats)
("r-igraph" ,r-igraph)
("r-matrix" ,r-matrix)
("r-rcpp" ,r-rcpp)
("r-residualmatrix" ,r-residualmatrix)
("r-s4vectors" ,r-s4vectors)
("r-scaledmatrix" ,r-scaledmatrix)
("r-scuttle" ,r-scuttle)
("r-singlecellexperiment" ,r-singlecellexperiment)
("r-summarizedexperiment" ,r-summarizedexperiment)))
(native-inputs `(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/batchelor")
(synopsis "Single-Cell Batch Correction Methods")
(description
"This package implements a variety of methods for batch correction of
single-cell (RNA sequencing) data. This includes methods based on detecting
mutually nearest neighbors, as well as several efficient variants of linear
regression of the log-expression values. Functions are also provided to
perform global rescaling to remove differences in depth between batches, and
to perform a principal components analysis that is robust to differences in
the numbers of cells across batches.")
(license license:gpl3)))
(define-public r-mast
(package
(name "r-mast")