gnu: Add r-batchelor.
* gnu/packages/bioconductor.scm (r-batchelor): New variable.
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@ -6236,6 +6236,49 @@ (define-public r-residualmatrix
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multiplication and calculation of row/column sums or means.")
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(license license:gpl3)))
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(define-public r-batchelor
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(package
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(name "r-batchelor")
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(version "1.8.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "batchelor" version))
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(sha256
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(base32
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"1xm204wp3m3mmlc1s59lscbbjvwm5nj32vvf16njcg7pb32lsiqa"))))
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(properties `((upstream-name . "batchelor")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-beachmat" ,r-beachmat)
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("r-biocgenerics" ,r-biocgenerics)
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("r-biocneighbors" ,r-biocneighbors)
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("r-biocparallel" ,r-biocparallel)
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("r-biocsingular" ,r-biocsingular)
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("r-delayedarray" ,r-delayedarray)
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("r-delayedmatrixstats" ,r-delayedmatrixstats)
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("r-igraph" ,r-igraph)
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("r-matrix" ,r-matrix)
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("r-rcpp" ,r-rcpp)
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("r-residualmatrix" ,r-residualmatrix)
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("r-s4vectors" ,r-s4vectors)
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("r-scaledmatrix" ,r-scaledmatrix)
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("r-scuttle" ,r-scuttle)
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("r-singlecellexperiment" ,r-singlecellexperiment)
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("r-summarizedexperiment" ,r-summarizedexperiment)))
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(native-inputs `(("r-knitr" ,r-knitr)))
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(home-page "https://bioconductor.org/packages/batchelor")
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(synopsis "Single-Cell Batch Correction Methods")
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(description
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"This package implements a variety of methods for batch correction of
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single-cell (RNA sequencing) data. This includes methods based on detecting
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mutually nearest neighbors, as well as several efficient variants of linear
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regression of the log-expression values. Functions are also provided to
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perform global rescaling to remove differences in depth between batches, and
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to perform a principal components analysis that is robust to differences in
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the numbers of cells across batches.")
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(license license:gpl3)))
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(define-public r-mast
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(package
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(name "r-mast")
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