gnu: Add r-depecher.
* gnu/packages/bioconductor.scm (r-depecher): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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@ -4974,3 +4974,53 @@ (define-public r-mixomics
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implemented in mixOmics can also handle missing values without having to
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delete entire rows with missing data.")
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(license license:gpl2+)))
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(define-public r-depecher
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(package
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(name "r-depecher")
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(version "1.0.3")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "DepecheR" version))
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(sha256
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(base32
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"0qj2h2a50fncppvi2phh0mbivxkn1mv702mqpi9mvvkf3bzq8m0h"))))
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(properties `((upstream-name . "DepecheR")))
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(build-system r-build-system)
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(arguments
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`(#:phases
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(modify-phases %standard-phases
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(add-after 'unpack 'fix-syntax-error
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(lambda _
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(substitute* "src/Makevars"
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((" & ") " && "))
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#t)))))
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(propagated-inputs
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`(("r-beanplot" ,r-beanplot)
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("r-biocparallel" ,r-biocparallel)
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("r-dosnow" ,r-dosnow)
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("r-dplyr" ,r-dplyr)
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("r-foreach" ,r-foreach)
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("r-ggplot2" ,r-ggplot2)
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("r-gplots" ,r-gplots)
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("r-mass" ,r-mass)
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("r-matrixstats" ,r-matrixstats)
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("r-mixomics" ,r-mixomics)
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("r-moments" ,r-moments)
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("r-rcpp" ,r-rcpp)
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("r-rcppeigen" ,r-rcppeigen)
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("r-reshape2" ,r-reshape2)
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("r-viridis" ,r-viridis)))
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(home-page "https://bioconductor.org/packages/DepecheR/")
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(synopsis "Identify traits of clusters in high-dimensional entities")
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(description
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"The purpose of this package is to identify traits in a dataset that can
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separate groups. This is done on two levels. First, clustering is performed,
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using an implementation of sparse K-means. Secondly, the generated clusters
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are used to predict outcomes of groups of individuals based on their
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distribution of observations in the different clusters. As certain clusters
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with separating information will be identified, and these clusters are defined
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by a sparse number of variables, this method can reduce the complexity of
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data, to only emphasize the data that actually matters.")
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(license license:expat)))
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