gnu: Add r-depecher.

* gnu/packages/bioconductor.scm (r-depecher): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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zimoun 2019-07-24 20:22:04 +02:00 committed by Ricardo Wurmus
parent 1adb9cbc5e
commit a0efa069a1
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@ -4974,3 +4974,53 @@ (define-public r-mixomics
implemented in mixOmics can also handle missing values without having to
delete entire rows with missing data.")
(license license:gpl2+)))
(define-public r-depecher
(package
(name "r-depecher")
(version "1.0.3")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "DepecheR" version))
(sha256
(base32
"0qj2h2a50fncppvi2phh0mbivxkn1mv702mqpi9mvvkf3bzq8m0h"))))
(properties `((upstream-name . "DepecheR")))
(build-system r-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'fix-syntax-error
(lambda _
(substitute* "src/Makevars"
((" & ") " && "))
#t)))))
(propagated-inputs
`(("r-beanplot" ,r-beanplot)
("r-biocparallel" ,r-biocparallel)
("r-dosnow" ,r-dosnow)
("r-dplyr" ,r-dplyr)
("r-foreach" ,r-foreach)
("r-ggplot2" ,r-ggplot2)
("r-gplots" ,r-gplots)
("r-mass" ,r-mass)
("r-matrixstats" ,r-matrixstats)
("r-mixomics" ,r-mixomics)
("r-moments" ,r-moments)
("r-rcpp" ,r-rcpp)
("r-rcppeigen" ,r-rcppeigen)
("r-reshape2" ,r-reshape2)
("r-viridis" ,r-viridis)))
(home-page "https://bioconductor.org/packages/DepecheR/")
(synopsis "Identify traits of clusters in high-dimensional entities")
(description
"The purpose of this package is to identify traits in a dataset that can
separate groups. This is done on two levels. First, clustering is performed,
using an implementation of sparse K-means. Secondly, the generated clusters
are used to predict outcomes of groups of individuals based on their
distribution of observations in the different clusters. As certain clusters
with separating information will be identified, and these clusters are defined
by a sparse number of variables, this method can reduce the complexity of
data, to only emphasize the data that actually matters.")
(license license:expat)))