gnu: Add r-radiogx.

* gnu/packages/bioconductor.scm (r-radiogx): New variable.

Change-Id: I8fd06a18bd68f9a3baa2cc129d62aef06528bc97
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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Mădălin Ionel Patrașcu 2023-10-31 11:57:29 +01:00 committed by Ricardo Wurmus
parent 7170720e48
commit a0a377fdd6
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@ -7847,6 +7847,51 @@ (define-public r-r4rna
with numerical methods for computing statistics for each.")
(license license:gpl3)))
(define-public r-radiogx
(package
(name "r-radiogx")
(version "2.4.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "RadioGx" version))
(sha256
(base32 "18zqfnwjil4mv7fgh4wvnniyybmyqkg0hk2wc57rcn0mlppa3602"))))
(properties `((upstream-name . "RadioGx")))
(build-system r-build-system)
(propagated-inputs
(list r-assertthat
r-biobase
r-biocgenerics
r-biocparallel
r-catools
r-coregx
r-data-table
r-downloader
r-magicaxis
r-matrixstats
r-rcolorbrewer
r-reshape2
r-s4vectors
r-scales
r-summarizedexperiment))
(native-inputs (list r-knitr))
(home-page "https://bioconductor.org/packages/RadioGx")
(synopsis "Analysis of large-scale radio-genomic data")
(description
"This package is a computational tool box for radio-genomic analysis
which integrates radio-response data, radio-biological modelling and
comprehensive cell line annotations for hundreds of cancer cell lines. The
@code{RadioSet} class enables creation and manipulation of standardized
datasets including information about cancer cells lines, radio-response assays
and dose-response indicators. Included methods allow fitting and plotting
dose-response data using established radio-biological models along with
quality control to validate results. Additional functions related to fitting
and plotting dose response curves, quantifying statistical correlation and
calculating @acronym{AUC, area under the curve} or @acronym{SF, survival
fraction} are included.")
(license license:gpl3)))
(define-public r-raggedexperiment
(package
(name "r-raggedexperiment")