gnu: Add r-apcomplex.

* gnu/packages/bioconductor.scm (r-apcomplex): New variable.
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Mădălin Ionel Patrașcu 2023-03-25 00:18:52 +01:00 committed by Ricardo Wurmus
parent e65ba1ccee
commit 9f08080b38
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@ -11102,32 +11102,57 @@ (define r-rcppnumerical
@code{Rcpp}.")
(license license:gpl2+)))
(define-public r-apcomplex
(package
(name "r-apcomplex")
(version "2.66.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "apComplex" version))
(sha256
(base32 "057p1bsqqw3r49bsx78prqc4jha468bfx50gpl62giix0cfs007f"))))
(properties `((upstream-name . "apComplex")))
(build-system r-build-system)
(propagated-inputs
(list r-graph
r-org-sc-sgd-db
r-rbgl
r-rgraphviz))
(home-page "https://bioconductor.org/packages/apComplex")
(synopsis "Estimate protein complex membership using AP-MS protein data")
(description
"This package provides functions to estimate a bipartite graph of protein
complex membership using @acronym{AP-MS, affinity purificationmass
spectrometry} data.")
(license license:lgpl2.0+)))
(define-public r-apeglm
(package
(name "r-apeglm")
(version "1.22.1")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "apeglm" version))
(sha256
(base32
"19r1mhpkn3xy6l188c14k9xgn25xqc718bwrlmnz63lak6mp4ws7"))))
(properties `((upstream-name . "apeglm")))
(build-system r-build-system)
(propagated-inputs
(list r-emdbook
r-genomicranges
r-rcpp
r-rcppeigen
r-rcppnumerical
r-summarizedexperiment))
(native-inputs (list r-knitr r-rmarkdown))
(home-page "https://bioconductor.org/packages/apeglm")
(synopsis "Approximate posterior estimation for GLM coefficients")
(description "This package provides Bayesian shrinkage estimators for
(name "r-apeglm")
(version "1.22.1")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "apeglm" version))
(sha256
(base32
"19r1mhpkn3xy6l188c14k9xgn25xqc718bwrlmnz63lak6mp4ws7"))))
(properties `((upstream-name . "apeglm")))
(build-system r-build-system)
(propagated-inputs
(list r-emdbook
r-genomicranges
r-rcpp
r-rcppeigen
r-rcppnumerical
r-summarizedexperiment))
(native-inputs (list r-knitr r-rmarkdown))
(home-page "https://bioconductor.org/packages/apeglm")
(synopsis "Approximate posterior estimation for GLM coefficients")
(description "This package provides Bayesian shrinkage estimators for
effect sizes for a variety of GLM models, using approximation of the
posterior for individual coefficients.")
(license license:gpl2)))
(license license:gpl2)))
(define-public r-greylistchip
(package