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gnu: r-glimma: Update to 2.10.0.

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* gnu/packages/bioconductor.scm (r-glimma): Update to 2.10.0.
[source]: Delete minified JavaScript files.
[arguments]: Add 'process-javascript phase.
[native-inputs]: Add esbuild.
This commit is contained in:
Ricardo Wurmus 2023-04-28 16:08:32 +02:00
parent 9619504c81
commit 9b03d78000
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GPG key ID: 197A5888235FACAC
1 changed files with 55 additions and 3 deletions
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58
gnu/packages/bioconductor.scm
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@ -10619,16 +10619,68 @@ (define-public r-goseq
(define-public r-glimma
(package
(name "r-glimma")
(version "2.8.0")
(version "2.10.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "Glimma" version))
(sha256
(base32
"1fskabpd3xlrbhqvzam9ibpxmbdys7y1b265np8hz4k704ww1g22"))))
"0171wizl516chzzwnbc2z2bf5sk4a491fcs4yhq5ycqaqpjmbg35"))
(modules '((guix build utils)))
(snippet
'(with-directory-excursion "inst/htmlwidgets/lib/"
(for-each delete-file
;; XXX: we keep inst/v1/js/glimma.min.js because
;; it's not clear how to build it.
(cons "vega/vega.min.js"
(find-files "datatables"
"\\.min\\.js$")))))))
(properties `((upstream-name . "Glimma")))
(build-system r-build-system)
(arguments
(list
#:modules '((guix build utils)
(guix build r-build-system)
(srfi srfi-1))
#:phases
'(modify-phases %standard-phases
(add-after 'unpack 'process-javascript
(lambda* (#:key inputs #:allow-other-keys)
(with-directory-excursion "inst/htmlwidgets/lib/"
(let ((files (list "datatables/Buttons-1.6.1/js/buttons.bootstrap.js"
"datatables/Buttons-1.6.1/js/buttons.bootstrap4.js"
"datatables/Buttons-1.6.1/js/buttons.colVis.js"
"datatables/Buttons-1.6.1/js/buttons.flash.js"
"datatables/Buttons-1.6.1/js/buttons.foundation.js"
"datatables/Buttons-1.6.1/js/buttons.html5.js"
"datatables/Buttons-1.6.1/js/buttons.jqueryui.js"
"datatables/Buttons-1.6.1/js/buttons.print.js"
"datatables/Buttons-1.6.1/js/buttons.semanticui.js"
"datatables/Buttons-1.6.1/js/dataTables.buttons.js"
"datatables/DataTables-1.10.20/js/dataTables.bootstrap.js"
"datatables/DataTables-1.10.20/js/dataTables.bootstrap4.js"
"datatables/DataTables-1.10.20/js/dataTables.foundation.js"
"datatables/DataTables-1.10.20/js/dataTables.jqueryui.js"
"datatables/DataTables-1.10.20/js/dataTables.semanticui.js"
"datatables/DataTables-1.10.20/js/jquery.dataTables.js"
"datatables/JSZip-2.5.0/jszip.js"
"datatables/Scroller-2.0.1/js/dataTables.scroller.js"
"datatables/Scroller-2.0.1/js/scroller.bootstrap.js"
"datatables/Scroller-2.0.1/js/scroller.bootstrap4.js"
"datatables/Scroller-2.0.1/js/scroller.foundation.js"
"datatables/Scroller-2.0.1/js/scroller.jqueryui.js"
"datatables/Scroller-2.0.1/js/scroller.semanticui.js"
"datatables/datatables.js"
"datatables/jQuery-1.12.4/jquery-1.12.4.js"
"vega/vega.js")))
(for-each (lambda (source)
(let ((target (string-append (basename source ".js") ".min.js")))
(format #true "Processing ~a --> ~a~%"
source target)
(invoke "esbuild" source "--minify"
(string-append "--outfile=" target))))
files))))))))
(propagated-inputs
(list r-deseq2
r-edger
@ -10638,7 +10690,7 @@ (define-public r-glimma
r-s4vectors
r-summarizedexperiment))
(native-inputs
(list r-knitr))
(list esbuild r-knitr))
(home-page "https://github.com/Shians/Glimma")
(synopsis "Interactive HTML graphics")
(description