From 973b21aa6a2b8e4c5e8473a9ca194ce7611c827f Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 24 Oct 2021 13:37:53 +0000 Subject: [PATCH] gnu: Add r-umi4cpackage. * gnu/packages/bioinformatics.scm (r-umi4cpackage): New variable. --- gnu/packages/bioinformatics.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 63b391683c..fbcd571c59 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7647,6 +7647,33 @@ (define-public r-snapatac single cell ATAC-seq sequencing data.") (license license:gpl3))) +(define-public r-umi4cpackage + (let ((commit "88b07d896a137418ba6c31c2474b9dbe1d86fc20") + (revision "1")) + (package + (name "r-umi4cpackage") + (version (git-version "0.0.1" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/tanaylab/umi4cpackage") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0bjzamdw2lcfhlbzc0vdva87c3wwnij8jsvnrpx4wyyxvpcz13m5")))) + (properties `((upstream-name . "umi4cPackage"))) + (build-system r-build-system) + (propagated-inputs + `(("r-misha" ,r-misha) + ("r-zoo" ,r-zoo))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/tanaylab/umi4cpackage") + (synopsis "Processing and analysis of UMI-4C contact profiles.") + (description "This is a package that lets you process UMI-4C data from +scratch to produce nice plots.") + (license license:expat)))) + (define-public r-shinycell (let ((commit "aecbd56e66802f28e397f5ae1f19403aadd12163")