gnu: Add r-awst.

* gnu/packages/bioconductor.scm (r-awst): New variable.
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Mădălin Ionel Patrașcu 2022-06-23 14:44:54 +02:00 committed by Ricardo Wurmus
parent d9686315bd
commit 930b1e0458
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@ -2317,6 +2317,33 @@ (define-public r-antiprofiles
tumor samples from healthy controls.")
(license license:artistic2.0)))
(define-public r-awst
(package
(name "r-awst")
(version "1.4.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "awst" version))
(sha256
(base32
"0iw3zycmj95rmdx7f2w0j4yxkzd90y87lrzgdn9cyvvzi5avflav"))))
(properties `((upstream-name . "awst")))
(build-system r-build-system)
(propagated-inputs (list r-summarizedexperiment))
(native-inputs (list r-knitr))
(home-page "https://github.com/drisso/awst")
(synopsis "Asymmetric within-sample transformation")
(description
"This package @dfn{awst} (Asymmetric Within-Sample Transformation) that
regularizes RNA-seq read counts and reduces the effect of noise on the
classification of samples. AWST comprises two main steps: standardization and
smoothing. These steps transform gene expression data to reduce the noise of
the lowly expressed features, which suffer from background effects and low
signal-to-noise ratio, and the influence of the highly expressed features,
which may be the result of amplification bias and other experimental
artifacts.")
(license license:expat)))
(define-public r-baalchip
(package
(name "r-baalchip")