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gnu: r-biocparallel: Update to 1.32.1.

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* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.32.1.
[arguments]<phases>: Update 'make-reproducible' to released files.
[propagated-inputs]: Add r-cpp11.
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zimoun 2022-11-17 03:50:08 +01:00 committed by Ricardo Wurmus
parent 1ef39d3d28
commit 9048d502da
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GPG key ID: 197A5888235FACAC
1 changed files with 5 additions and 7 deletions
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gnu/packages/bioconductor.scm
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@ -4589,13 +4589,13 @@ (define-public r-biomartr
(define-public r-biocparallel
(package
(name "r-biocparallel")
(version "1.30.3")
(version "1.32.1")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "BiocParallel" version))
(sha256
(base32
"1rs3wmasl9mx7f399iclvm0bnvggvjj2a88zbi294r5m8wxqlc92"))))
"1fkfbs0n0sdssli7ibrswkfag080kgv8n1zf6ssxx729g1fz3m3h"))))
(properties
`((upstream-name . "BiocParallel")))
(build-system r-build-system)
@ -4607,18 +4607,16 @@ (define-public r-biocparallel
;; Remove generated documentation.
(for-each delete-file
'("inst/doc/BiocParallel_BatchtoolsParam.pdf"
"inst/doc/Introduction_To_BiocParallel.pdf"
"inst/doc/Errors_Logs_And_Debugging.pdf"
"inst/doc/BiocParallel_BatchtoolsParam.R"
"inst/doc/Introduction_To_BiocParallel.R"
"inst/doc/Errors_Logs_And_Debugging.R"))
"inst/doc/Errors_Logs_And_Debugging.R"
"inst/doc/Random_Numbers.R"))
;; Remove time-dependent macro
(substitute* '("inst/doc/BiocParallel_BatchtoolsParam.Rnw"
"inst/doc/Introduction_To_BiocParallel.Rnw"
"inst/doc/Errors_Logs_And_Debugging.Rnw"
"vignettes/BiocParallel_BatchtoolsParam.Rnw"
"vignettes/Introduction_To_BiocParallel.Rnw"
"vignettes/Errors_Logs_And_Debugging.Rnw")
(("\\today") "later"))
@ -4628,7 +4626,7 @@ (define-public r-biocparallel
(string-append
m "; if (!is.na(Sys.getenv(\"SOURCE_DATE_EPOCH\"))) {set.seed(100)}\n"))))))))
(propagated-inputs
(list r-bh r-codetools r-futile-logger r-snow))
(list r-bh r-cpp11 r-codetools r-futile-logger r-snow))
(native-inputs
(list r-knitr))
(home-page "https://bioconductor.org/packages/BiocParallel")