gnu: r-ldblock: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-ldblock): Move from here... * gnu/packages/bioconductor.scm (r-ldblock): ...to here.
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@ -9405,6 +9405,40 @@ (define-public r-kegggraph
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functionalities including parsing, graph operation, visualization and etc.")
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functionalities including parsing, graph operation, visualization and etc.")
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(license license:gpl2+)))
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(license license:gpl2+)))
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(define-public r-ldblock
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(package
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(name "r-ldblock")
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(version "1.20.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "ldblock" version))
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(sha256
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(base32
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"09i3ikv0axks9g842z1pjsc8x0fba51zyyc218h0bylbi1n9cdkm"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biocgenerics" ,r-biocgenerics)
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("r-ensdb-hsapiens-v75" ,r-ensdb-hsapiens-v75)
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("r-ensembldb" ,r-ensembldb)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicfiles" ,r-genomicfiles)
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("r-httr" ,r-httr)
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("r-matrix" ,r-matrix)
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("r-rsamtools" ,r-rsamtools)
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("r-snpstats" ,r-snpstats)
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("r-variantannotation" ,r-variantannotation)))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://bioconductor.org/packages/ldblock")
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(synopsis "Data structures for linkage disequilibrium measures in populations")
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(description
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"This package defines data structures for @dfn{linkage
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disequilibrium} (LD) measures in populations. Its purpose is to simplify
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handling of existing population-level data for the purpose of flexibly
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defining LD blocks.")
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(license license:artistic2.0)))
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(define-public r-pathview
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(define-public r-pathview
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(package
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(package
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(name "r-pathview")
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(name "r-pathview")
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@ -10695,40 +10695,6 @@ (define-public r-erma
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by Ernst and Kellis.")
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by Ernst and Kellis.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-ldblock
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(package
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(name "r-ldblock")
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(version "1.20.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "ldblock" version))
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(sha256
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(base32
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"09i3ikv0axks9g842z1pjsc8x0fba51zyyc218h0bylbi1n9cdkm"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biocgenerics" ,r-biocgenerics)
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("r-ensdb-hsapiens-v75" ,r-ensdb-hsapiens-v75)
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("r-ensembldb" ,r-ensembldb)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicfiles" ,r-genomicfiles)
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("r-httr" ,r-httr)
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("r-matrix" ,r-matrix)
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("r-rsamtools" ,r-rsamtools)
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("r-snpstats" ,r-snpstats)
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("r-variantannotation" ,r-variantannotation)))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://bioconductor.org/packages/ldblock")
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(synopsis "Data structures for linkage disequilibrium measures in populations")
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(description
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"This package defines data structures for @dfn{linkage
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disequilibrium} (LD) measures in populations. Its purpose is to simplify
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handling of existing population-level data for the purpose of flexibly
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defining LD blocks.")
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(license license:artistic2.0)))
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(define-public r-dropbead
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(define-public r-dropbead
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(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
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(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
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(revision "2"))
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(revision "2"))
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