From 8e6f63dd83b06962e155a88f101eda9c18f3ca7e Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 13 Dec 2019 22:57:59 +0100 Subject: [PATCH] gnu: Add r-activepathways. * gnu/packages/bioconductor.scm (r-activepathways): New variable. --- gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index ca29fb5a3e..1ef636d7f6 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -6093,3 +6093,33 @@ (define-public r-activedriverwgs human genome. ActiveDriverWGS detects coding and noncoding driver elements using whole genome sequencing data.") (license license:gpl3))) + +;; This is a CRAN package, but it depends on Bioconductor packages, so we put +;; it here. +(define-public r-activepathways + (package + (name "r-activepathways") + (version "1.0.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "ActivePathways" version)) + (sha256 + (base32 + "1xb0d1svmzw404pv8ja6wr4773k7x2lxkrzrayilvzqbfzj1wx20")))) + (properties + `((upstream-name . "ActivePathways"))) + (build-system r-build-system) + (propagated-inputs + `(("r-data-table" ,r-data-table) + ("r-ggplot2" ,r-ggplot2) + ("r-metap" ,r-metap))) + (home-page "https://cran.r-project.org/web/packages/ActivePathways/") + (synopsis "Multivariate pathway enrichment analysis") + (description + "This package represents an integrative method of analyzing multi omics +data that conducts enrichment analysis of annotated gene sets. ActivePathways +uses a statistical data fusion approach, rationalizes contributing evidence +and highlights associated genes, improving systems-level understanding of +cellular organization in health and disease.") + (license license:gpl3)))