From 89acc4d5c645cf8bdb8f35c490b50f168931bd12 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Mon, 17 Apr 2023 11:40:28 +0200 Subject: [PATCH] gnu: r-mixedpower: Update to b2b87068. * gnu/packages/statistics.scm (r-mixedpower): Update to commit b2b87068546327d8f592d141e5482e0478c1b2ee, remove patch. * gnu/packages/patches/r-mixedpower-r2power.patch: Remove file. * gnu/local.mk: Unregister it. --- gnu/local.mk | 1 - .../patches/r-mixedpower-r2power.patch | 26 ------------------- gnu/packages/statistics.scm | 11 ++++---- 3 files changed, 5 insertions(+), 33 deletions(-) delete mode 100644 gnu/packages/patches/r-mixedpower-r2power.patch diff --git a/gnu/local.mk b/gnu/local.mk index 0849d32276..1241ab09c0 100644 --- a/gnu/local.mk +++ b/gnu/local.mk @@ -1817,7 +1817,6 @@ dist_patch_DATA = \ %D%/packages/patches/racket-zuo-bin-sh.patch \ %D%/packages/patches/remake-impure-dirs.patch \ %D%/packages/patches/restic-0.9.6-fix-tests-for-go1.15.patch \ - %D%/packages/patches/r-mixedpower-r2power.patch \ %D%/packages/patches/rng-tools-revert-build-randstat.patch \ %D%/packages/patches/rocm-comgr-3.1.0-dependencies.patch \ %D%/packages/patches/rocm-opencl-runtime-4.3-noclinfo.patch \ diff --git a/gnu/packages/patches/r-mixedpower-r2power.patch b/gnu/packages/patches/r-mixedpower-r2power.patch deleted file mode 100644 index a3307ca7b5..0000000000 --- a/gnu/packages/patches/r-mixedpower-r2power.patch +++ /dev/null @@ -1,26 +0,0 @@ -From e882fda905150649aa887c72731144330ca297b5 Mon Sep 17 00:00:00 2001 -From: Lars-Dominik Braun -Date: Fri, 28 Oct 2022 09:18:11 +0200 -Subject: [PATCH] Fix R2power with R>=4.2 - -The previous commit missed this if statement. ---- - R/meta_functions.R | 2 +- - 1 file changed, 1 insertion(+), 1 deletion(-) - -diff --git a/R/meta_functions.R b/R/meta_functions.R -index a65f0c1..fb3feba 100644 ---- a/R/meta_functions.R -+++ b/R/meta_functions.R -@@ -172,7 +172,7 @@ R2power <- function(model, data, fixed_effects, simvar, - } # end if databased - - # 2. SESOI -- suppressWarnings(if (SESOI != F){ # supress warning generated by if statement if SESOI =! F -+ suppressWarnings(if (!is.logical(SESOI)){ - - # change beta coeficients to SESOI values - model@beta <- SESOI --- -2.37.4 - diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 138088b4b3..dcb0485992 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -7276,9 +7276,10 @@ (define-public r-simr (license license:gpl2+))) (define-public r-mixedpower - ;; This commit contains fixes for R>=4.2. A newer release does not exist. - (let ((commit "6520195481bca3ce01862ef80a28c53b0a35d0f5") - (revision "1")) + ;; This commit contains fixes for R>=4.2 and contains new features. A + ;; newer release does not exist. + (let ((commit "b2b87068546327d8f592d141e5482e0478c1b2ee") + (revision "2")) (package (name "r-mixedpower") (version (git-version "2.0" revision commit)) @@ -7291,9 +7292,7 @@ (define-public r-mixedpower (commit commit))) (file-name (git-file-name name version)) (sha256 - (base32 "114z9pvya2jg10y804ga41gq00r7zcw4a7c7234ybhmv3jqw78q1")) - (patches - (search-patches "r-mixedpower-r2power.patch")))) + (base32 "0pys66a6c1k2fp5qk9grhzg1q1d3q51rggcilmdssimkmcsm234z")))) (properties `((upstream-name . "mixedpower"))) (build-system r-build-system) (propagated-inputs